mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.7 revision b7a44cd89118
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 2,450 | G→T | 100% | L705L (CTG→CTT) | thrA → | bifunctional aspartokinase I/homeserine dehydrogenase I |
| RA | 45,662 | C→T | 100% | V155I (GTC→ATC) | caiT ← | L‑carnitine/gamma‑butyrobetaine antiporter |
| RA | 70,867 | T→C | 100% | D92G (GAC→GGC) | araA ← | L‑arabinose isomerase |
| JC JC | 183,262 | IS150 (+) +3 bp | 100% | coding (1184‑1186/1518 nt) | dgt → | deoxyguanosinetriphosphate triphosphohydrolase |
| RA | 226,159 | C→A | 100% | P163T (CCT→ACT) | gmhB → | hypothetical protein |
| RA | 239,002 | A→C | 100% | A4A (GCA→GCC) | dnaQ → | DNA polymerase III subunit epsilon |
| JC JC | 336,055 | IS150 (–) +3 bp | 100% | coding (2805‑2807/3075 nt) | lacZ ← | beta‑D‑galactosidase |
| RA | 393,720 | G→A | 100% | R96H (CGC→CAC) | queA → | S‑adenosylmethionine:tRNA ribosyltransferase‑isomerase |
| RA | 430,835 | C→T | 100% | intergenic (‑48/‑108) | insL‑2 ← / → lon | putative transposase insL for insertion sequence IS186/DNA‑binding ATP‑dependent protease La |
| RA | 433,668 | C→T | 100% | R55C (CGT→TGT) | hupB → | HU, DNA‑binding transcriptional regulator, beta subunit |
| RA | 461,704 | C→T | 7.3% | H1034H (CAC→CAT) | kefA → | fused conserved protein |
| JC | 474,374 | +TCGCCAGCG | 77.0% | coding (932/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| MC JC JC | 490,484 | IS150 (+) Δ1 bp :: +CATT | 100% | intergenic (‑37/+24) | ybbN ← / ← ybbO | predicted thioredoxin domain‑containing protein/short chain dehydrogenase |
| JC JC | 502,543 | IS150 (–) +3 bp | 100% | coding (848‑850/1095 nt) | ybbB ← | tRNA 2‑selenouridine synthase, selenophosphate‑dependent |
| MC JC | 547,700 | Δ8,125 bp | 100% | IS1‑mediated | [nmpC]–[ECB_00513] | [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, [ECB_00513] |
| RA | 588,490:1 | +AA | 100% | intergenic (‑217/‑52) | ybdK ← / → insJ‑1 | gamma‑glutamyl:cysteine ligase/IS150 hypothetical protein |
| JC JC | 651,703 | +GAA :: IS150 (+) +2 bp | 100% | intergenic (‑83/+176) | ybeB ← / ← phpB | hypothetical protein/predicted alpha‑ribazole‑5'‑P phosphatase |
| RA | 666,130:1 | +T | 100% | pseudogene (358/387 nt) | gltL ← | ATP‑binding protein of glutamate/aspartate transport system; b0652_1 |
| RA | 728,198 | T→C | 12.9% | P119P (CCA→CCG) | abrB ← | predicted regulator |
| RA | 735,660 | T→A | 100% | intergenic (‑401/‑308) | gltA ← / → sdhC | citrate synthase/succinate dehydrogenase cytochrome b556 large membrane subunit |
| RA | 743,238 | G→A | 8.8% | G309D (GGC→GAC) | sucB → | dihydrolipoamide acetyltransferase |
| RA | 761,693 | T→G | 100% | noncoding (47/76 nt) | valT → | tRNA‑Val |
| RA | 796,329 | Δ1 bp | 100% | coding (1/993 nt) | ECB_00737 ← | hypothetical protein |
| RA | 875,094 | G→C | 100% | H65D (CAT→GAT) | deoR ← | DNA‑binding transcriptional repressor |
| JC JC | 896,463 | IS150 (+) +3 bp | 100% | coding (159‑161/432 nt) | ECB_00838 → | putative phage tail protein |
| JC JC | 929,574 | IS150 (+) +3 bp | 100% | coding (946‑948/1653 nt) | hcp ← | hydroxylamine reductase |
| RA | 943,554 | A→C | 100% | intergenic (‑53/+232) | infA ← / ← aat | translation initiation factor IF‑1/leucyl/phenylalanyl‑tRNA‑protein transferase |
| RA | 950,280 | T→G | 18.7% | intergenic (+133/‑2) | lrp → / → ftsK | DNA‑binding transcriptional dual regulator, leucine‑binding/DNA‑binding membrane protein required for chromosome resolution and partitioning |
| RA | 962,002 | G→A | 100% | intergenic (+13/+22) | dmsC → / ← ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/predicted hydrolase |
| JC JC | 969,836 | IS150 (+) +3 bp | 100% | coding (810‑812/2283 nt) | pflB ← | pyruvate formate lyase I |
| RA | 1,033,977 | C→T | 12.9% | A472T (GCC→ACC) | ycbZ ← | predicted peptidase |
| JC JC | 1,102,032 | IS150 (–) +3 bp | 100% | coding (756‑758/1065 nt) | phoH → | conserved protein with nucleoside triphosphate hydrolase domain |
| RA | 1,166,129 | T→C | 100% | intergenic (+156/‑55) | fabG → / → acpP | 3‑oxoacyl‑[acyl‑carrier‑protein] reductase/acyl carrier protein |
| RA | 1,207,861 | T→G | 100% | N47T (AAC→ACC) | ycfC ← | hypothetical protein |
| JC JC | 1,218,697 | IS150 (+) +3 bp | 100% | coding (1209‑1211/1524 nt) | ycgG → | conserved inner membrane protein |
| JC JC | 1,270,660 | IS150 (–) +4 bp | 100% | intergenic (‑167/+235) | ldrC ← / ← chaA | toxic polypeptide, small/calcium/sodium:proton antiporter |
| RA | 1,343,489 | G→A | 100% | L542L (CTG→TTG) | yciR ← | modulator of Rnase II stability |
| JC JC | 1,354,425 | IS150 (–) +3 bp | 100% | coding (1053‑1055/1644 nt) | sapA ← | predicted antimicrobial peptide transporter subunit |
| JC JC | 1,462,266 | IS150 (+) +3 bp | 100% | intergenic (‑28/‑311) | mokB ← / → trg | regulatory peptide/methyl‑accepting chemotaxis protein III, ribose and galactose sensor receptor |
| MC | 1,609,175 | Δ7,554 bp | 100% | between IS3 | ybcW–[ECB_01526] | ybcW, gnsB, ynfN, ECB_01516, cspI, ydfP, ydfQ, ydfR, essQ, ECB_01522, ECB_01523, insE‑4, insF‑4, [ECB_01526] |
| JC JC | 1,619,834 | IS150 (–) +3 bp | 100% | intergenic (‑71/+139) | hokD ← / ← ECB_01533 | small toxic polypeptide/conserved hypothetical protein |
| RA | 1,733,865 | G→T | 100% | A301S (GCC→TCC) | pykF → | pyruvate kinase |
| RA | 1,746,189 | G→A | 100% | intergenic (‑237/‑152) | ydiJ ← / → ydiK | predicted FAD‑linked oxidoreductase/predicted inner membrane protein |
| RA | 1,749,019 | G→A | 100% | pseudogene (326/858 nt) | ydiM → | putative transport protein (MFS family); b1690_1 |
| RA | 1,879,026 | T→A | 100% | D380V (GAT→GTT) | yoaE ← | fused predicted membrane protein/conserved protein |
| RA | 1,902,269:1 | +T | 100% | coding (14/342 nt) | yebY ← | hypothetical protein |
| RA | 1,915,101 | Δ1 bp | 100% | intergenic (‑211/‑127) | zwf ← / → yebK | glucose‑6‑phosphate 1‑dehydrogenase/predicted DNA‑binding transcriptional regulator |
| RA | 1,916,109 | A→G | 100% | intergenic (+12/‑116) | yebK → / → pykA | predicted DNA‑binding transcriptional regulator/pyruvate kinase |
| RA | 1,930,575 | C→A | 100% | F137L (TTC→TTA) | yecE → | hypothetical protein |
| RA | 1,948,728 | T→C | 100% | M343V (ATG→GTG) | tap ← | methyl‑accepting protein IV |
| MC JC | 2,034,358 | Δ19,491 bp | 100% | [insB‑14]–[wcaJ] | 20 genes [insB‑14], insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| JC JC | 2,196,656 | IS150 (–) +3 bp | 100% | coding (1350‑1352/1992 nt) | cirA ← | ferric iron‑catecholate outer membrane transporter |
| RA | 2,268,951 | T→G | 100% | I129S (ATC→AGC) | atoC → | fused response regulator of ato operon, in two‑component system with AtoS: response regulator/sigma54 interaction protein |
| JC JC | 2,322,340 | IS186 (+) +6 bp | 66.0% | coding (131‑136/963 nt) | menC ← | O‑succinylbenzoate synthase |
| MC JC JC | 2,397,529 | IS150 (–) Δ14 bp | 100% | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
| JC JC | 2,405,131 | IS1 (–) +9 bp | 100% | coding (168‑176/1347 nt) | fadL → | long‑chain fatty acid outer membrane transporter |
| JC JC | 2,448,493 | IS186 (–) +6 bp | 100% | intergenic (+24/+21) | nupC → / ← yfeA | nucleoside (except guanosine) transporter/predicted diguanylate cyclase |
| JC JC | 2,522,900 | IS150 (–) +3 bp | 100% | coding (255‑257/2019 nt) | hyfB → | NADH dehydrogenase subunit N |
| RA | 2,606,786 | C→A | 11.9% | H85N (CAC→AAC) | hmpA → | fused nitric oxide dioxygenase/dihydropteridine reductase 2 |
| RA | 2,702,361 | G→A | 100% | G160S (GGC→AGC) | proX → | glycine betaine transporter subunit |
| RA | 2,758,314 | A→C | 100% | K374Q (AAA→CAA) | ygbK → | hypothetical protein |
| RA | 2,775,878 | Δ1 bp | 100% | intergenic (‑48/+201) | insJ‑3 ← / ← cysH | IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase |
| RA | 2,847,052 | A→G | 100% | V10A (GTT→GCT) | recD ← | exonuclease V (RecBCD complex), alpha chain |
| RA | 3,067,926 | G→A | 100% | A40V (GCA→GTA) | yghS ← | predicted protein with nucleoside triphosphate hydrolase domain |
| RA | 3,093,020 | T→G | 100% | F74L (TTT→TTG) | yqhH → | predicted outer membrane lipoprotein |
| JC JC | 3,270,443 | IS150 (–) +4 bp | 100% | intergenic (+21/+24) | nlp → / ← murA | DNA‑binding transcriptional activator of maltose metabolism/UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,271,926 | T→C | 100% | D38G (GAC→GGC) | yrbA ← | predicted DNA‑binding transcriptional regulator |
| RA | 3,287,483 | T→C | 100% | M260V (ATG→GTG) | arcB ← | hybrid sensory histidine kinase in two‑component regulatory system with ArcA |
| RA | 3,308,106 | G→A | 100% | A6A (GCG→GCA) | yhcB → | hypothetical protein |
| RA | 3,312,775 | G→A | 100% | R59H (CGC→CAC) | argR → | arginine repressor |
| RA | 3,328,272 | A→G | 100% | V236A (GTT→GCT) | mreB ← | cell wall structural complex MreBCD, actin‑like component MreB |
| RA | 3,338,108 | T→G | 100% | intergenic (+266/‑63) | prmA → / → yhdG | ribosomal protein L11 methyltransferase/tRNA‑dihydrouridine synthase B |
| RA | 3,396,621 | T→G | 63.1% | N380H (AAC→CAC) | chiA ← | periplasmic endochitinase |
| RA | 3,409,316 | T→G | 100% | S41S (TCT→TCG) | yheS → | fused predicted transporter subunits of ABC superfamily: ATP‑binding components |
| MC JC | 3,482,398 | Δ25 bp | 100% | coding (714‑738/2706 nt) | malT → | transcriptional regulator MalT |
| RA | 3,533,061 | T→G | 53.3% | K124N (AAA→AAC) | ftsE ← | predicted transporter subunit: ATP‑binding component of ABC superfamily |
| RA | 3,536,881 | A→G | 100% | E148G (GAA→GGA) | yhhN → | conserved inner membrane protein |
| JC JC | 3,537,178 | +GTACTGACCCCAAAA :: IS150 (–) :: +CAA | 100% | coding (40/2199 nt) | zntA → | zinc, cobalt and lead efflux system |
| RA | 3,684,366 | C→A | 100% | R216S (CGT→AGT) | ECB_03438 → | conserved hypothetical protein |
| JC JC | 3,697,154 | IS150 (–) +3 bp | 100% | coding (278‑280/4134 nt) | rhsA → | rhsA element core protein RshA |
| JC JC | 3,766,595 | IS150 (+) +3 bp | 100% | coding (1111‑1113/1206 nt) | gltS ← | glutamate transporter |
| JC JC | 3,841,192 | IS150 (+) +3 bp | 100% | coding (389‑391/1074 nt) | recF ← | recombination protein F |
| RA | 3,893,552 | A→G | 11.7% | intergenic (+7/‑49) | kup → / → insJ‑5 | potassium transporter/IS150 hypothetical protein |
| MC JC | 3,894,997 | Δ6,138 bp | 100% | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| JC | 3,947,853 | +ATTGATA | 100% | intergenic (‑47/+639) | aslA ← / ← hemY | acrylsulfatase‑like enzyme/predicted protoheme IX synthesis protein |
| JC JC | 3,981,782 | IS150 (–) +3 bp | 100% | coding (249‑251/1224 nt) | ECB_03710 ← | putative permease |
| JC JC | 3,990,387 | IS150 (+) +3 bp | 100% | coding (1250‑1252/1491 nt) | ECB_03719 ← | conserved hypothetical protein |
| JC JC | 4,092,861 | IS150 (+) +3 bp | 94.4% | coding (87‑89/429 nt) | yiiT → | stress‑induced protein |
| RA | 4,096,877 | G→T | 100% | Y232* (TAC→TAA) | glpF ← | glycerol facilitator |
| RA | 4,101,091 | T→C | 100% | E47G (GAA→GGA) | hslU ← | ATP‑dependent protease ATP‑binding subunit |
| RA | 4,133,104 | G→A | 100% | R34R (CGC→CGT) | ppc ← | phosphoenolpyruvate carboxylase |
| RA | 4,201,980 | G→A | 100% | P194S (CCT→TCT) | iclR ← | DNA‑binding transcriptional repressor |
| MC JC | 4,205,069 | Δ5 bp | 100% | coding (2311‑2315/3684 nt) | metH → | B12‑dependent methionine synthase |
| MC JC | 4,275,717 | 57510 bp→5 bp | 100% | [yjcO]–[lysU] | 52 genes [yjcO], fdhF, yjcP, yjcQ, yjcR, yjcS, alsK, alsE, alsC, alsA, alsB, rpiR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, phnC, phnB, phnA, yjdA, yjcZ, proP, basS, basR, yjdB, yjdE, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, dcuR, dcuS, dcuS, yjdI, yjdJ, yjdK, [lysU] |
|
| RA | 4,384,430 | C→A | 100% | S29Y (TCT→TAT) | yjeB → | predicted DNA‑binding transcriptional regulator |
| JC JC | 4,415,710 | IS150 (–) +3 bp | 100% | coding (848‑850/1413 nt) | cycA → | D‑alanine/D‑serine/glycine transporter |
| RA | 4,455,055 | T→C | 9.8% | K206K (AAA→AAG) | pyrB ← | aspartate carbamoyltransferase catalytic subunit |
| RA | 4,459,658 | A→G | 100% | P315P (CCA→CCG) | yjgL → | hypothetical protein |
| JC JC | 4,462,655 | IS1 (+) +9 bp | 100% | intergenic (‑85/‑100) | yjgM ← / → yjgN | predicted acetyltransferase/conserved inner membrane protein |
| RA | 4,558,775 | Δ1 bp | 100% | coding (663/1425 nt) | hsdS ← | specificity determinant for hsdM and hsdR |
| JC JC | 4,615,673 | IS150 (+) +4 bp | 100% | coding (145‑148/1233 nt) | nadR → | nicotinamide‑nucleotide adenylyltransferase |
| RA | 4,628,460 | T→G | 100% | T3P (ACC→CCC) | arcA ← | DNA‑binding response regulator in two‑component regulatory system with ArcB or CpxA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 16975 | 17614 | 640 | 67 [0] | [2] 3 | [nhaA] | [nhaA] |
| * | * | ÷ | REL606 | 1973387–1974039 | 1975482 | 1444–2096 | 3 [2] | [2] 3 | [insA‑13]–[yedV] | [insA‑13],insB‑13,yedU,[yedV] |
| * | * | ÷ | REL606 | 1975537 | 1976104 | 568 | 3 [2] | [2] 3 | yedV | predicted sensory kinase in two‑component regulatory system with YedW |
| * | * | ÷ | REL606 | 1976169 | 1977672 | 1504 | 3 [2] | [2] 3 | [yedW]–[yedY] | [yedW],yedX,[yedY] |
| * | * | ÷ | REL606 | 1977823 | 1978098 | 276 | 3 [2] | [2] 3 | yedY | hypothetical protein |
| * | * | ÷ | REL606 | 1978133 | 1980787 | 2655 | 3 [2] | [2] 3 | [yedY]–[yodB] | [yedY],yedZ,yodA,[yodB] |
| * | * | ÷ | REL606 | 1980864 | 1981046 | 183 | 3 [2] | [2] 3 | [yodB] | [yodB] |
| * | * | ÷ | REL606 | 1981209 | 1982312 | 1104 | 3 [2] | [1] 15 | serU–[yeeI] | serU,[yeeI] |
| * | * | ÷ | REL606 | 2086926 | 2093026 | 6101 | 50 [0] | [0] 56 | yegM–[yegO] | yegM,yegN,[yegO] |
| * | * | ÷ | REL606 | 2103827 | 2103963 | 137 | 4 [1] | [2] 3 | [ECB_01992]–[ECB_01993] | [ECB_01992],[ECB_01993] |
| * | * | ÷ | REL606 | 2266298 | 2266490 | 193 | 3 [2] | [2] 4 | rcsC | hybrid sensory kinase in two‑component regulatory system with RcsB and YojN |
| * | * | ÷ | REL606 | 2655705 | 2655780 | 76 | 36 [0] | [0] 23 | [yfiH] | [yfiH] |
| * | * | ÷ | REL606 | 2842085 | 2842264 | 180 | 3 [2] | [2] 3 | metW–[metV] | metW,[metV] |
| * | * | ÷ | REL606 | 2999597 | 3048488 | 48892 | 43 [0] | [0] 27 | [flu]–yghK | [flu],yeeR,ECB_02802,yafZ,ECB_02804,yeeS,yeeT,yeeU,yeeV,yeeW,ECB_02810,ECB_02811,ECB_02812,ECB_02813,ECB_02814,ECB_02815,ECB_02816,ECB_02817,ECB_02818,ECB_02819,ECB_02820,ECB_02821,ECB_02822,insB‑22,insA‑22,ECB_02825,ECB_02826,ECB_02827,ECB_02828,yghD,yghE,ECB_02831,ECB_02832,ECB_02833,ECB_02834,ECB_02835,ECB_02836,ECB_02837,ECB_02838,yghF,yghG,pppA,yghJ,yghK |
| * | * | ÷ | REL606 | 4047793 | 4048618 | 826 | 3 [2] | [2] 5 | [yihR] | [yihR] |
| * | * | ÷ | REL606 | 4049118 | 4049579 | 462 | 3 [2] | [0] 22 | yihS | predicted glucosamine isomerase |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 16974 | 0 (0.000) | 52 (1.980) | 29/274 | NT | 100% | intergenic (‑16/‑514) | mokC/nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| ? | REL606 | = 666130 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 18002 = | 3 (0.110) | 58 (2.170) | 31/278 | NT | 95.1% | coding (515/1167 nt) | nhaA | pH‑dependent sodium/proton antiporter |
| ? | REL606 | 588495 = | NA (NA) | noncoding (1/1977 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 241699 = | NA (NA) | 31 (1.190) | 20/272 | NT | NA | noncoding (443/768 nt) | IS1 | repeat region |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 386412 | 35 (1.320) | 3 (0.110) | 3/276 | NT | 7.9% | coding (101/1296 nt) | phoR | sensory histidine kinase in two‑component regulatory system with PhoB |
| ? | REL606 | = 666130 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 589404 = | NA (NA) | 80 (3.020) | 44/276 | NT | NA | noncoding (910/1977 nt) | IS150 | repeat region |
| ? | REL606 | = 590471 | NA (NA) | noncoding (1977/1977 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 590471 | NA (NA) | 35 (1.320) | 22/276 | NT | 100% | noncoding (1977/1977 nt) | IS150 | repeat region |
| ? | REL606 | 2093027 = | 0 (0.000) | coding (1534/3078 nt) | yegO | multidrug efflux system, subunit C | |||||
| * | ? | REL606 | = 590471 | NA (NA) | 21 (0.800) | 19/274 | NT | 100% | noncoding (1977/1977 nt) | IS150 | repeat region |
| ? | REL606 | 2655781 = | 0 (0.000) | coding (662/732 nt) | yfiH | hypothetical protein | |||||
| * | ? | REL606 | = 590471 | NA (NA) | 34 (1.280) | 26/276 | NT | 100% | noncoding (1977/1977 nt) | IS150 | repeat region |
| ? | REL606 | = 2999596 | 0 (0.000) | coding (33/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter | |||||
| * | ? | REL606 | = 590471 | NA (NA) | 21 (0.790) | 16/278 | NT | 100% | noncoding (1977/1977 nt) | IS150 | repeat region |
| ? | REL606 | 4049580 = | 0 (0.000) | coding (324/1242 nt) | yihS | predicted glucosamine isomerase | |||||
| * | ? | REL606 | = 590472 | NA (NA) | 8 (0.300) +A |
5/276 | NT | NA | intergenic (+27/‑71) | insK‑1/hokE | IS150 putative transposase; b3558_1/toxic polypeptide, small |
| ? | REL606 | 3651090 = | NA (NA) | intergenic (‑32/‑48) | hokA/insJ‑4 | toxic polypeptide, small/IS150 hypothetical protein | |||||
| * | ? | REL606 | 664688 = | NA (NA) | 29 (1.090) | 25/278 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 2086925 | 0 (0.000) | intergenic (‑1346/‑199) | yegL/yegM | hypothetical protein/multidrug efflux system, subunit A | |||||
| * | ? | REL606 | = 666130 | NA (NA) | 15 (0.560) | 8/278 | NT | NA | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 711957 | NA (NA) | coding (102/1665 nt) | rhsC | rhsC element core protein RshC | |||||
| * | ? | REL606 | = 666132 | NA (NA) | 9 (0.340) | 9/278 | NT | NA | pseudogene (356/387 nt) | gltL | ATP‑binding protein of glutamate/aspartate transport system; b0652_1 |
| ? | REL606 | = 2775878 | NA (NA) | intergenic (‑48/+201) | insJ‑3/cysH | IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase | |||||
| * | ? | REL606 | = 1974039 | NA (NA) | 14 (0.520) | 13/278 | NT | 93.3% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | REL606 | 1982313 = | 1 (0.040) | coding (664/798 nt) | yeeI | hypothetical protein | |||||
| * | ? | REL606 | 2100285 = | 30 (1.120) | 11 (0.490) | 8/232 | NT | 22.4% | intergenic (+149/+124) | yegQ/ogrK | predicted peptidase/phage DNA‑binding transcriptional regulator |
| ? | REL606 | = 2122430 | 51 (2.290) | coding (196/216 nt) | ECB_02013 | conserved hypothetical protein; putative exported protein | |||||
| * | ? | REL606 | = 2263507 | NA (NA) | 30 (1.120) | 20/278 | NT | 81.1% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | REL606 | 2267039 = | 7 (0.260) | coding (297/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC | |||||
| * | ? | REL606 | = 2655704 | 0 (0.000) | 22 (0.830) | 19/276 | NT | 100% | intergenic (‑123/+7) | clpB/yfiH | protein disaggregation chaperone/hypothetical protein |
| ? | REL606 | 3651091 = | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 2713428 = | 31 (1.190) | 36 (1.380) | 20/272 | NT | 53.7% | noncoding (77/93 nt) | serV | tRNA‑Ser |
| ? | REL606 | = 2774196 | NA (NA) | noncoding (1343/1343 nt) | IS186 | repeat region | |||||
| * | ? | REL606 | 2774434 = | NA (NA) | 22 (0.840) +TG |
16/274 | NT | NA | intergenic (+411/+27) | insL‑5/insK‑3 | putative transposase insL for insertion sequence IS186/IS150 putative transposase |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 2774435 = | NA (NA) | 4 (0.150) | 4/276 | NT | 12.5% | noncoding (1443/1443 nt) | IS150 | repeat region |
| ? | REL606 | 2899617 = | 28 (1.060) | coding (378/1626 nt) | yqeB | conserved protein with NAD(P)‑binding Rossman fold | |||||
| * | ? | REL606 | 2774966 = | NA (NA) | 40 (1.500) | 26/278 | NT | NA | noncoding (912/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | = 2775877 | NA (NA) | 44 (1.670) | 26/274 | NT | NA | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 2822568 = | NA (NA) | noncoding (387/768 nt) | IS1 | repeat region | |||||
| * | ? | REL606 | = 2775877 | NA (NA) | 25 (0.940) | 18/278 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3048489 = | 0 (0.000) | intergenic (‑318/+37) | yghK/glcB | glycolate transporter/malate synthase | |||||
| * | ? | REL606 | 3651090 = | NA (NA) | 11 (0.410) | 10/278 | NT | NA | intergenic (‑32/‑48) | hokA/insJ‑4 | toxic polypeptide, small/IS150 hypothetical protein |
| ? | REL606 | = 3894998 | NA (NA) | intergenic (+28/‑160) | insK‑5/rbsD | IS150 putative transposase/predicted cytoplasmic sugar‑binding protein | |||||
| * | ? | REL606 | 3651091 = | NA (NA) | 20 (0.750) | 14/278 | NT | 80.0% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 4047675 | 5 (0.190) | coding (874/927 nt) | yihR | predicted aldose‑1‑epimerase | |||||
| * | ? | REL606 | 3651092 = | NA (NA) | 24 (0.910) | 20/276 | NT | NA | noncoding (2/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 3652537 | NA (NA) | intergenic (+30/+249) | insK‑4/glyS | IS150 putative transposase/glycyl‑tRNA synthetase subunit beta | |||||
| * | ? | REL606 | = 3652531 | NA (NA) | 6 (0.230) | 4/274 | NT | NA | noncoding (1441/1443 nt) | IS150 | repeat region |
| ? | REL606 | 3893549 = | NA (NA) | intergenic (+4/‑52) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein | |||||
| * | ? | REL606 | 3697156 = | 0 (0.000) | 35 (1.310) | 26/278 | NT | 100% | coding (280/4134 nt) | rhsA | rhsA element core protein RshA |
| ? | REL606 | 3893553 = | NA (NA) | intergenic (+8/‑48) | kup/insJ‑5 | potassium transporter/IS150 hypothetical protein | |||||
| * | ? | REL606 | = 3741582 | NA (NA) | 31 (1.170) | 21/276 | NT | NA | noncoding (384/768 nt) | IS1 | repeat region |
| ? | REL606 | = 3894996 | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 4034655 = | 49 (1.840) | 78 (2.940) | 41/276 | NT | 61.5% | intergenic (‑58/+228) | glnL/glnA | sensory histidine kinase in two‑component regulatory system with GlnG/glutamine synthetase |
| ? | REL606 | = 4034991 | 49 (1.850) | coding (1302/1410 nt) | glnA | glutamine synthetase | |||||