| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 962,002 | G→A | 100% | intergenic (+13/+22) | dmsC → / ← ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/predicted hydrolase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 962,002 | 0 | G | A | 100.0% | 54.8 / NA | 18 | intergenic (+13/+22) | dmsC/ycaC | dimethyl sulfoxide reductase, anaerobic, subunit C/predicted hydrolase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (9/9); total (9/9) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
TCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGC > REL606/961894‑962146 | gctttATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACg < 1:194134/146‑1 (MQ=255) cattcattCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATa > 1:186394/1‑150 (MQ=255) tcattcTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACt < 2:646609/150‑1 (MQ=255) gCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGtcatc > 1:127289/1‑150 (MQ=255) aaTTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATc > 1:650374/1‑150 (MQ=255) aTTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGaac > 1:611855/1‑150 (MQ=255) aTTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGaac > 1:49207/1‑150 (MQ=255) aTTCCATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTCATCATAACAACCGAGGTTCCGGCCCCGGTTCTTTCTTATATCTGGTTCATTCACGTGTTCTAACTGGTCATCAAATTACCATAATCTGGATTCTGGCTAGAGaat > 1:211794/1‑149 (MQ=255) gCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGt > 2:7032/1‑150 (MQ=255) gCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGt > 2:160619/1‑150 (MQ=255) gCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGGGTCATAACTGGTCATCAAATTACGATAATCAGGACTGTGGTCAGAGAACAACGACGCCaat > 1:123297/1‑148 (MQ=255) cttatGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTc < 1:160171/148‑1 (MQ=255) atatGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTcc < 2:613648/150‑1 (MQ=255) aCCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCaa < 1:10563/150‑1 (MQ=255) cGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAata < 2:391912/150‑1 (MQ=255) gTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAatat < 2:294897/150‑1 (MQ=255) gTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAatat < 2:186930/150‑1 (MQ=255) gggATGGCCGTCGCAAGCTAATCATAACAACCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCAt > 2:391591/1‑150 (MQ=255) aacCGAGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGcacgc < 2:549574/150‑1 (MQ=255) | TCTGTATCATTCATTCTGCTTCTGGCAGGGGAATTAATCGGTCGCGGCGTATTCTATGGTTTGCATATGACCGTGGGGATGGCCGTCGCAAGCTAATCATAACAACCGGGGTTTCGGCCCCGGTTCTCTTTTATTTCTGCTTCGTTAACGTGTCATAACTGGTCATCAAATTACGATAATCAGGAATGTGGTTAGAGAACAACGTCGCCAGTCCTTCAATATCATTACGCCAGTCGCGATGCAGCTCGCACGC > REL606/961894‑962146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |