Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 950,280 | T→G | 18.7% | intergenic (+133/‑2) | lrp → / → ftsK | DNA‑binding transcriptional dual regulator, leucine‑binding/DNA‑binding membrane protein required for chromosome resolution and partitioning |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 950,280 | 0 | T | G | 18.7% | 84.7 / 8.3 | 37 | intergenic (+133/‑2) | lrp/ftsK | DNA‑binding transcriptional dual regulator, leucine‑binding/DNA‑binding membrane protein required for chromosome resolution and partitioning |
Reads supporting (aligned to +/- strand): ref base T (15/14); new base G (4/3); total (20/17) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GACGCGCTAACACGGAACAGGTGCAAAATCGGCGTATTTTGATTACACTCCTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTGTCCTGTTTGCCGTCTGGTTGATGGCTGCCTTACTAAGCTTTAACCCTTCGGA > REL606/950138‑950424 | gACGCGCTAACACGGAACAGGTGCAAAATCGGCGTATTTTGATTACACTCCTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGTCTTTCTTGAGc < 1:301606/150‑1 (MQ=255) acGGAACAGGTGCAAAATCTGCGTATTTTGATTACACTCCTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTGCTTGAGCCAGGAATacac < 1:100500/150‑1 (MQ=255) acGGAACAGGTGCAAAATCGGCGTATTTTGATTACACTCCTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATacac < 2:599900/150‑1 (MQ=255) gAACAGGTGCAAAATCGGCGTATTTTGATTACACTCCTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGa > 2:559452/1‑150 (MQ=255) gATTACACTCCTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGt > 2:161031/1‑150 (MQ=255) cacTCCTGTTAATCCATACAGCAACAGTACTGGGGTAAACTGGTACTGTTGTCCGTTTTGGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGt < 2:670815/150‑1 (MQ=255) cTCCGGTTAATCCATACAGCAACAGTACTGGGGTCACCTGGTACTGTTGTCCGGTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCGTGCTTCAGCTAGGCATACACTGAAGACAAAGAAGTCGCATTGACAGAGTTCAGTac > 1:324513/1‑149 (MQ=255) ccTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTCGTCCGTTGTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTCCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGCCAAAGTTAAGTAGCg > 1:282804/1‑150 (MQ=255) ccTGTTAATCCATACAGCAACACTACTGGGGTAACCTGGTACTGTTGTCCGTCTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGGGCCTTGCTTTAGCCAGGAATACACTTAAGACACAGAATTCACGTCGAGAAAGttctagtggc > 1:523047/1‑142 (MQ=255) cTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCgg > 2:634381/1‑150 (MQ=255) cTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCATTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACACAGTTAAGTAGCgg > 1:403334/1‑150 (MQ=255) cAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTCACCAAGTTAAGTAGCGGCCGTCGCCTTCTGaaa > 1:176582/1‑150 (MQ=255) aaCAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAg < 2:569730/150‑1 (MQ=255) aaCAGTACTGGAGTAACATGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTGCTTGAGCCAGGAATACACTGAAGAAAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAg < 1:132443/150‑1 (MQ=255) gtataagagacagtccTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGTAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCg < 2:592489/136‑1 (MQ=255) cAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCg < 2:206358/150‑1 (MQ=255) gTACTGGGGTCACCTGGTACTGTGGTCCGTTTTAGCATCGGGCCGGAAAAGCCTGTAACCGGGAGAGCCTTTCTTGCGCTAGGAATACACTGCAGACAAAGAAGTCACATTGACAATGGTAGGTCGCGGCCGTTGCTTTCTGGAAGCGtt > 1:609001/1‑150 (MQ=255) gTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGTAAGCGtt > 1:627784/1‑150 (MQ=255) gTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGtt > 2:57761/1‑150 (MQ=255) gTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGtt > 1:55682/1‑150 (MQ=255) gTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGtt > 1:330037/1‑150 (MQ=255) gTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGtt > 2:109662/1‑150 (MQ=255) gTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGtt > 2:347741/1‑150 (MQ=255) gTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACATGGAGAGCCTTGCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGtt > 1:479912/1‑150 (MQ=255) aCTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTGCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGc < 2:605651/150‑1 (MQ=255) aaCCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCtt < 2:330973/150‑1 (MQ=255) aCCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTa > 2:682128/1‑150 (MQ=255) aCCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGCTgactcttatac > 1:590751/1‑140 (MQ=255) tGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTg < 1:148719/150‑1 (MQ=255) tGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTg < 2:335790/150‑1 (MQ=255) tGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTg < 1:57592/150‑1 (MQ=255) tGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGGAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTg < 1:632523/150‑1 (MQ=255) cGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTGTCCTGTTTGCCGTCTGGTTGATgg < 1:680130/150‑1 (MQ=255) cGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTGTCCTGTTTGCCGTCTGGTTGATgg < 1:160582/150‑1 (MQ=255) gCCTGTAACCTGGAGAGCCTTGCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTGTCCTGTTTGCCGTCTGGTTGATGGCTGCCTTACTaa > 1:371415/1‑150 (MQ=255) cTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTGTCCTGTTTGCCGTCTGGTTGATGGCTGCCTTACTAAGCTTTAAcc < 2:629633/150‑1 (MQ=255) gCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTGTCCTGTTTGCCGTCTGGTTGATGGCTGCCTTACTAAGCTTTAACCCTTCGGa > 1:85511/1‑150 (MQ=255) | GACGCGCTAACACGGAACAGGTGCAAAATCGGCGTATTTTGATTACACTCCTGTTAATCCATACAGCAACAGTACTGGGGTAACCTGGTACTGTTGTCCGTTTTAGCATCGGGCAGGAAAAGCCTGTAACCTGGAGAGCCTTTCTTGAGCCAGGAATACACTGAAGACAAAGAAGTCACATTGACAAAGTTAAGTAGCGGCCGTCGCCTTCTGGAAGCGTTGCTGATCCTTATTGTCCTGTTTGCCGTCTGGTTGATGGCTGCCTTACTAAGCTTTAACCCTTCGGA > REL606/950138‑950424 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |