New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 590471 | NA (NA) | 35 (1.320) | 22/276 | NT | 100% | noncoding (1977/1977 nt) | IS150 | repeat region |
? | REL606 | 2093027 = | 0 (0.000) | coding (1534/3078 nt) | yegO | multidrug efflux system, subunit C |
TTGCCGTGACGCTTTCTGTCGCCATTGGTATATCGTTGCTGGTTTCTCTGACATTAACGCCAATGATGTGTGGCTGGATGCTGAAAGCCAGCAAGCCGCGCGAGCAAAAGCGACTGCGTGGTTTTGGTCGCATGTTGGTAGCCCTGCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGACACTGGCGTGTTGATG > REL606/2092881‑2093176 | gtgtataagagacaggttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:430798‑M2/4‑1 (MQ=255) gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 2:108151‑M2/4‑1 (MQ=255) gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 2:245532‑M2/4‑1 (MQ=255) gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:365467‑M2/4‑1 (MQ=255) gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:640839‑M2/4‑1 (MQ=255) gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:218671‑M2/4‑1 (MQ=255) gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:603674‑M2/4‑1 (MQ=255) gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 1:58296‑M2/4‑1 (MQ=255) gaactgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacacaac < 2:140048‑M2/4‑1 (MQ=255) gaactgaaagatgctgttacggaatatattgaaaactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatgaggcatatatgcctcgtgtttaactgtccaacgttttggggtcagtacacaac < 1:500632‑M2/4‑1 (MQ=255) gaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacactacaacat < 2:25448‑M2/9‑4 (MQ=255) gaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGc < 2:557841‑M2/9‑1 (MQ=255) gaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGc < 2:427386‑M2/9‑1 (MQ=255) tgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGc < 2:178164‑M2/15‑1 (MQ=255) tgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGc < 2:677582‑M2/15‑1 (MQ=255) tgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGc < 1:367155‑M2/15‑1 (MQ=255) atatattgaatactacaacagcagaagaattagtctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGaaa > 1:599219‑M2/124‑150 (MQ=255) atatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTTaaa > 1:666068‑M2/124‑150 (MQ=255) atattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATg > 1:292605‑M2/122‑150 (MQ=255) atattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATg > 2:201564‑M2/122‑150 (MQ=255) atattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATg > 1:130313‑M2/122‑150 (MQ=255) ctacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAAt < 2:137872‑M2/39‑1 (MQ=255) ctacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAAt < 2:675951‑M2/39‑1 (MQ=255) cagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAcc < 2:293437‑M2/45‑1 (MQ=255) cagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagaactatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAcc < 1:658322‑M2/45‑1 (MQ=255) agcagaagaattagactggaagtaaaaagtctgactccaattgaatatcgggatcagacctatatgacccgtgtttaacggtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATAccc < 1:373490‑M2/46‑1 (MQ=255) gcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggccagtacaCAACAAGGCTACGGCAAGTGACTGAAATGGGTCCCACATCATACCCg > 1:469754‑M2/104‑150 (MQ=255) agaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgactcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCtgg < 2:225160‑M2/52‑1 (MQ=255) aattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCtggtg < 1:152814‑M2/54‑1 (MQ=255) aagtggcctgaaaataaaaggtctgactccaaataaatatcggaatcagacctatatgcatcgtgtttaactgtccaactttttggggtaagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCtggtg < 1:33688‑M2/54‑1 (MQ=255) aaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCtt < 2:130689‑M2/69‑1 (MQ=255) aggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGc < 1:560928‑M2/72‑1 (MQ=255) gtctgactccaattgaatatcggaatcagacctatatgcgtcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCAc < 1:149411‑M2/74‑1 (MQ=255) ggctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCAc < 1:275754‑M2/74‑1 (MQ=255) atatcggaatctgacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATc < 1:202602‑M2/90‑1 (MQ=255) atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGGGCTGAATATCTg > 1:525679‑M2/59‑150 (MQ=255) cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGc < 2:195300‑M2/94‑1 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATAtc > 1:100001‑M2/49‑150 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATAtctc < 2:82206‑M2/104‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATAtctc < 2:371961‑M2/104‑1 (MQ=255) cctatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATAtctc < 2:100297‑M2/104‑1 (MQ=255) agtatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATAtctc < 2:560455‑M2/104‑1 (MQ=255) tatatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCCGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTAtatctcct > 1:558836‑M2/45‑148 (MQ=255) atatgcctcgtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGAt < 2:600983‑M2/107‑1 (MQ=255) gtgtttacctgtccaactttttggggtccgtaccCAACAAGGCTACGGCAAGACACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGACTATCTGGCTGTATATCTCGATCCCGAAAAc > 1:627318‑M2/35‑150 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAAc < 2:668034‑M2/116‑1 (MQ=255) taagagacaggtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGac < 2:682181‑M2/135‑1 (MQ=255) taagagacaggtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGac < 2:534648‑M2/135‑1 (MQ=255) gtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGGTTGGCACCATTGAGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGAGACTGGCgtgt > 1:409627‑M2/6‑150 (MQ=255) gtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCccggagcaggacctgtctctta > 1:533102‑M2/6‑140 (MQ=255) gtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCccggagcaggacctgtctctta > 1:680183‑M2/6‑140 (MQ=255) gtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGACACTGGCgtgt > 1:24688‑M2/6‑150 (MQ=255) gtacaCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGACACTGGCgtgt > 2:179336‑M2/6‑150 (MQ=255) CAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGACACTGGCGTGTTGATg > 2:167166‑M2/1‑150 (MQ=255) CAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGACACTGGCGTGTTGATg > 2:503970‑M2/1‑150 (MQ=255) CAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGACACTGGCGTGTTGATg > 2:537402‑M2/1‑150 (MQ=255) | TTGCCGTGACGCTTTCTGTCGCCATTGGTATATCGTTGCTGGTTTCTCTGACATTAACGCCAATGATGTGTGGCTGGATGCTGAAAGCCAGCAAGCCGCGCGAGCAAAAGCGACTGCGTGGTTTTGGTCGCATGTTGGTAGCCCTGCAACAAGGCTACGGCAAGTCACTGAAATGGGTGCTCAATCATACCCGTCTGGTGGGCGTGGTGCTGCTTGGCACCATTGCGCTGAATATCTGGCTGTATATCTCGATCCCGAAAACCTTCTTCCCGGAGCAGGACACTGGCGTGTTGATG > REL606/2092881‑2093176 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |