New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 386412	35 (1.320)	3 (0.110)	3/276	NT	7.9%	coding (101/1296 nt)	phoR	sensory histidine kinase in two‑component regulatory system with PhoB
	?	REL606	= 666130	NA (NA)					noncoding (1443/1443 nt)	IS150	repeat region

GGACGCAGAGCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGACCCCGCCACCGGGGCGTGGTAGCTGGGAACCGCTACTATACGGC  >  REL606/386268‑386545                                                                                                                                                 |                                                                                                                                      ggACGCAGAGCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTtgtac                                                                                                                                  <  2:68714‑M1/150‑6 (MQ=255) ggACGCAGAGCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGc                                                                                                                                  >  1:59652/1‑150 (MQ=255) ggACGCAGAGCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGc                                                                                                                                  <  2:506991/150‑1 (MQ=255)   aCGCAGAGCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTg                                                                                                                                >  2:72716/1‑150 (MQ=255)        gagCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATc                                                                                                                           >  2:152383/1‑150 (MQ=255)        gagCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATc                                                                                                                           >  2:66174/1‑150 (MQ=255)        gagCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGGACTGGAACGGCTGACGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTCCATTTTTTGGTTACCTCCCCTGGTTTTTGCTGGGATc                                                                                                                           >  1:162955/1‑150 (MQ=255)               gCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACg                                                                                                                    >  1:638975/1‑150 (MQ=255)                       tttCTTAACTGGAGTATCTTACGTGCTGGAACGGCTTTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCt                                                                                                            >  1:109808/1‑150 (MQ=255)                          cTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTAt                                                                                                         >  1:204382/1‑150 (MQ=255)                            tAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCt                                                                                                       <  2:159703/150‑1 (MQ=255)                                 ggAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCAt                                                                                                  >  1:50232/1‑150 (MQ=255)                                 ggAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCAt                                                                                                  >  2:373942/1‑150 (MQ=255)                                     tATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCt                                                                                              <  1:65978/150‑1 (MQ=255)                                      aTCTTACGTGCTGGAACGGCTGTTGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTg                                                                                             >  1:632133/1‑150 (MQ=255)                                      aTCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTtgtactgaccccaaaaagttggacagttaaacacgaggcata                                                                                             >  2:143758‑M1/1‑108 (MQ=255)                                      aTCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTg                                                                                             >  1:95467/1‑150 (MQ=255)                                          tACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTtgtactgaccccaaaaagttggacagttaaacacgaggcatatagg                                                                                         <  1:285080‑M1/150‑47 (MQ=255)                                          tACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAAt                                                                                         <  1:96048/150‑1 (MQ=255)                                                   gAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTgcgc                                                                                <  1:78465/150‑1 (MQ=255)                                                             cGTGGAAAAGGCGGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCAtggt                                                                      <  1:671250/150‑1 (MQ=255)                                                                  aaaaGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCtg                                                                 <  2:204970/150‑1 (MQ=255)                                                                      ggCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTgtggg                                                             >  2:92437/1‑150 (MQ=255)                                                                           gTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGAt                                                        >  1:563400/1‑150 (MQ=255)                                                                            tGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATc                                                       <  2:633990/150‑1 (MQ=255)                                                                              cTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCgt                                                     <  2:565041/150‑1 (MQ=255)                                                                              cTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCgt                                                     <  2:640853/150‑1 (MQ=255)                                                                                ggAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCgtag                                                   <  2:50384/150‑1 (MQ=255)                                                                                  aGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCgtagta                                                 <  2:40860/150‑1 (MQ=255)                                                                                   gctgctCCTTTGCGGCGTCCCGCCTGTCATCCTCGGTGCATTGTGTGGTTACAGGCGCTGGTTTGTGCTGGTATCGGGAACGGGCCTGCTCGTCTGGGATTGCTGGAATTTATTGCGCCTTTTATGCTGGCTGTGGGTGGATCGTAGTAt                                                <  1:377734/150‑1 (MQ=255)                                                                                   gctgctACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTAt                                                <  1:10884/150‑1 (MQ=255)                                                                                      gctACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGAc                                             <  2:59828/150‑1 (MQ=255)                                                                                        tACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGAccc                                           <  2:310672/150‑1 (MQ=255)                                                                                        tACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGAccc                                           <  2:3164/150‑1 (MQ=255)                                                                                                 gctTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGACCCCGCCACCgg                                  <  1:92163/150‑1 (MQ=255)                                                                                                            ttCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGACCCCGCCACCGGGGCGTGGTAGc                       >  1:271579/1‑150 (MQ=255)                                                                                                                tCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGACCCCGCCACCGGGGCGTGGTAGCTggg                   <  2:117975/150‑1 (MQ=255)                                                                                                                   tgcgTGCATTTTTTTGTGACCTGCCCTGTTTTTTGTTTGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGACCCCGCCACCGGGGCGTGGTAGCTGGGAAc                <  1:80016/147‑1 (MQ=255)                                                                                                                    gggTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGACCCCGCCACCGGGGCGTGGTAGCTGGGAAcc               <  2:272353/150‑1 (MQ=255)                                                                                                                     ggTTCATTTTTTGGTTACCTGCCCTGGTTtgtactgaccccaaaaagtttgacagttagacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatat              <  1:143347‑M1/150‑122 (MQ=255)                                                                                                                                 ggTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGACCCCGCCACCGGGGCGTGGTAGCTGGGAACCGCTACTATACGGc  <  2:623491/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                      GGACGCAGAGCAGGGCTTATGATTTCTTAACTGGAGTATCTTACGTGCTGGAACGGCTGTCGTGGAAAAGGCTGGTGCTGGAGCTGCTACTTTGCTGCTTCCCGGCTTTCATCCTGGGTGCATTTTTTGGTTACCTGCCCTGGTTTTTGCTGGCATCGGTAACGGGACTGCTTATCTGGCATTTCTGGAATTTATTGCGCCTTTCATGGTGGCTGTGGGTGGATCGTAGTATGACCCCGCCACCGGGGCGTGGTAGCTGGGAACCGCTACTATACGGC  >  REL606/386268‑386545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.