New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2775877	NA (NA)	44 (1.670)	26/274	NT	NA	noncoding (1/1443 nt)	IS150	repeat region
	?	REL606	2822568 =	NA (NA)					noncoding (387/768 nt)	IS1	repeat region

GACACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATACTGC  >  REL606/2775729‑2776018                                                                                                                                                     |                                                                                                                                              gcacccacagcGTGCCGTGATGATCCCGCAACCATCATCAGTTGTGAAGTAGTGTTTCACCTCTTCACGTCCCTTTTCAAACGGTTATTTTGGCTTTGACTTATTAGGGGCTATTCCTTTTCATCGTCCCACCAAATGGGTGCAGTACac                                                                                                                                              <  1:602928/140‑2 (MQ=1)            gTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAat                                                                                                                                  >  1:662966/1‑150 (MQ=18)                   gatgatCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCt                                                                                                                           >  2:158673/1‑150 (MQ=255)                       atCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCTCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTgggg                                                                                                                       <  1:463943/150‑1 (MQ=255)                        tCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGc                                                                                                                      >  2:131540/1‑150 (MQ=255)                        tCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGc                                                                                                                      >  2:43508/1‑150 (MQ=255)                            gTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCtttt                                                                                                                  >  1:140504/1‑150 (MQ=255)                               ataaacataaGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTc                                                                                                               <  1:289384/145‑1 (MQ=255)                               aCCGTCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTc                                                                                                               <  1:532769/150‑1 (MQ=255)                                ccATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTcc                                                                                                              >  1:441846/1‑150 (MQ=255)                                         gTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAAc                                                                                                     <  2:85598/150‑1 (MQ=255)                                         gTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAAc                                                                                                     <  2:140907/150‑1 (MQ=255)                                         gTTGTGAAGTAGTGATTCACGACTTCAAGGCGCGTTTCAAAAGGGTATTTTGGCTTTGACATATTAGTGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAAc                                                                                                     <  1:489075/150‑1 (MQ=255)                                                           aCGACTTCAATGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGTGTATTCCATTGCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGGCCATCTGGAACCTCGCGAATGCTTAgcgc                                                                                   <  1:516324/150‑1 (MQ=21)                                                                          ttttCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGc                                                                    <  2:664926/150‑1 (MQ=255)                                                                              cAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCAccc                                                                <  2:443096/150‑1 (MQ=255)                                                                                           tGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCtat                                                   <  1:131161/150‑1 (MQ=255)                                                                                           ataagagacagtatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCtat                                                   <  1:334558/139‑1 (MQ=38)                                                                                             gCTTTTACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATAc                                                 <  1:43370/150‑1 (MQ=255)                                                                                             gCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATAc                                                 <  2:51737/150‑1 (MQ=255)                                                                                             gCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATAc                                                 <  1:158228/150‑1 (MQ=255)                                                                                                  gACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGAt                                            <  2:159733/150‑1 (MQ=255)                                                                                                      tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCtatctgtctcttat                                        >  2:335510/1‑139 (MQ=38)                                                                                                      tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAAtt                                        >  2:67183/1‑150 (MQ=255)                                                                                                            gggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCa                                  >  2:673664/1‑150 (MQ=255)                                                                                                                                         tGGGTGTAGTAC‑TGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGTAACCTCGCTAATGAGTAACGCCAGACAGCCTCAAGCACCCGACGGCATTTTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATAc     <  1:264980/150‑1 (MQ=255)                                                                                                                                           ggTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATACTg   <  1:66985/150‑1 (MQ=255)                                                                                                                                            gTGCAGTACA‑GTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATACTGc  >  2:604375/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                              GACACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCAAGCACCCGACGCCATTCTATACCTGATAATTCTTCCAGCGGCGTTCACGTTTAAAATCAGGAATACTGC  >  REL606/2775729‑2776018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.