Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 1,270,660 IS150 (–) +4 bp 100% intergenic (‑167/+235) ldrC ← / ← chaA toxic polypeptide, small/calcium/sodium:proton antiporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 664688 =NA (NA)33 (1.250) 24/274 NT 100% noncoding (1/1443 nt) IS150 repeat region
?REL606 1270660 = 0 (0.000)intergenic (‑167/+238) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter
* ? REL606 = 666130NA (NA)29 (1.090) 21/278 NT 100% noncoding (1443/1443 nt) IS150 repeat region
?REL606 = 1270663 0 (0.000)intergenic (‑170/+235) ldrC/chaA toxic polypeptide, small/calcium/sodium:proton antiporter

CACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664834‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAGGCTCGCAATTCT  >  REL606/1270660‑1270804
                                                                                                                                                                                                                                                                                                    
CACCAAAACGTGCCGAGATGATCCTGTAACCCTCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGGATTTTGGCTATGACATATTAGGGGCTATTCAATTTCATCGTCCAACAAAATGGGTGCAGTACACCG                                                                                                                                                >  1:451404/1‑150
  CCAAAACGTGCCTAGATGATCCTGTAACCATCATCAGTTGGGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGg                                                                                                                                              <  1:636121/150‑2
        CGTGCCTAGAGGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGTGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTC                                                                                                                                        <  1:93219/150‑1
        CGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTC                                                                                                                                        <  2:657103/150‑1
                     TCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCCACAACATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGG                                                                                                                           >  1:241213/1‑150
                            gccttctTCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAATAGGTTATTTTGGCTTTGACATTTTAGGGGCTATTCCATTTCATCGTCCAACTCGATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGAGACTAC                                                                                                                    <  1:250434/143‑1
                            ACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTAC                                                                                                                    <  2:90823/150‑1
                            ACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTAC                                                                                                                    >  2:387284/1‑150
                            ACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTAC                                                                                                                    <  2:378808/150‑1
                                 CATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTC                                                                                                               <  2:134046/150‑1
                                      GTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTC                                                                                                          >  2:164763/1‑150
                                                           ACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAA                                                                                     >  1:513574/1‑150
                                                            CTTCAAGGCTCTTTTCAAGAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACGACTTCTCAATTCATCTTCACTGCATCCCTGAAAT                                                                                    >  1:361510/1‑150
                                                                      CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATA                                                                          >  2:234952/1‑150
                                                                        TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGTTGCAGTACGCCGTATAATTCGGGCTTGGTGAGGTTTCTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGCTTGCAATAAg                                                                        >  1:257936/1‑149
                                                                                                ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAG                                                <  2:362553/150‑1
                                                                                                   TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTG                                             >  2:366599/1‑150
                                                                                                   TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATATTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTG                                             >  1:633226/1‑150
                                                                                                         GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACCTTCCGTCTTTTCAACAGCTGTTGCAG                                       >  1:549005/1‑150
                                                                                                         GGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAG                                       >  2:179837/1‑150
                                                                                                                 CCATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCG                               >  1:367388/1‑150
                                                                                                                 CCATTTCATCGTCCAACAAAATGGGTGAAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAACTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCG                               >  2:409596/1‑150
                                                                                                                   ATTTCATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTG                             <  2:368451/150‑1
                                                                                                                        ATCGTCCAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGT                        <  2:241893/150‑1
                                                                                                                              CAACAAAATGTGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGGTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGT                  <  1:569554/150‑1
                                                                                                                              CAACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGT                  <  2:203313/150‑1
                                                                                                                                ACAACATGGGTGCAGTACACCGGATAAGTCCGGCTTGGTGTGGATAATACTTCTCAATTCACCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTAC                <  1:532794/150‑1
                                                                                                                                ACAAAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTAC                <  1:365541/150‑1
                                                                                                                                  aagagacagGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAG              <  1:610104/141‑1
                                                                                                                                   AAATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAGG             <  2:515047/150‑1
                                                                                                                                    AATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAGGC            >  2:11525/1‑150
                                                                                                                                     ATGGGTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAGGCT           <  2:539393/150‑1
                                                                                                                                         GTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTAGTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCACGTTGCGGTACAGGTTCGCA       >  1:431865/1‑150
                                                                                                                                         GTGCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAGGCTCGCA       >  2:447251/1‑150
                                                                                                                                           GCAGTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAGctgtctctt     >  2:611894/1‑141
                                                                                                                                              GTACACCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAGGCTCGCAATTCT  >  2:48910/1‑150
                                                                                                                                                                                                                                                                                                    
CACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/664834‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caCCGGATAATTCCGGCTTGGTGTGGATACTACTTCTCAATTCATCTTCACTTCATCCCTGAAATGTTTGCAATAAAGAGTACATTCCGGCTTTTCAACAGCTGTTGCAGTGGTTTCGTGCAGGTTGTGGTACAGGCTCGCAATTCT  >  REL606/1270660‑1270804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.