New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 18002 =3 (0.110)58 (2.170) 31/278 NT 95.1% coding (515/1167 nt) nhaA pH‑dependent sodium/proton antiporter
?REL606 588495 = NA (NA)noncoding (1/1977 nt) IS150 repeat region

TTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT  >  REL606/588358‑588640
                                                                                                                                           |                                                                                                                                                 
tttttGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAcc                                                                                                                                         >  2:55864/1‑150 (MQ=255)
               aaCTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGa                                                                                                                          >  2:266160/1‑150 (MQ=255)
                              aaGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcc                                                                                                           >  2:580496/1‑150 (MQ=255)
                               aGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc                                                                                                          <  2:653835/150‑1 (MQ=255)
                               aGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc                                                                                                          <  2:154589/150‑1 (MQ=255)
                                     ttGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata                                                                                                    <  2:630417/150‑1 (MQ=255)
                                      tGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat                                                                                                   <  1:607318/150‑1 (MQ=255)
                                                      gtgACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATCTGTctcttatacacatc                                                                                   >  2:342964/1‑137 (MQ=37)
                                                      gtgACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAc                                                                                   >  2:262268/1‑150 (MQ=255)
                                                      gtgACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTCACGATTTAGCCATGAAAAAAAAAACGGGTGCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATAAACCGGAATAGCCCCTAATTTGTAGAATCCAAAATaa                                                                                   >  1:82312/1‑149 (MQ=21)
                                                            aGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                             >  2:138470/1‑150 (MQ=255)
                                                            aGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                             >  2:522061/1‑150 (MQ=255)
                                                            aGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAAAGCCCCTAATATGTCAAAGCCAAAATACCCtttt                                                                             >  2:606232/1‑150 (MQ=255)
                                                             gTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTg                                                                            >  1:399497/1‑150 (MQ=255)
                                                                aTGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaa                                                                         <  1:578798/150‑1 (MQ=255)
                                                                 tGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa                                                                        >  1:272447/1‑150 (MQ=255)
                                                                                               gACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTcac                                          <  2:400651/150‑1 (MQ=255)
                                                                                                  gtgtGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAc                                       <  1:309666/147‑1 (MQ=255)
                                                                                                  gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAc                                       <  1:34594/150‑1 (MQ=255)
                                                                                                      gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgat                                   >  2:180706/1‑150 (MQ=255)
                                                                                                            tGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGt                             <  1:520563/150‑1 (MQ=255)
                                                                                                                          ggTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAtctc               <  1:55700/150‑1 (MQ=255)
                                                                                                                               agcttcaaaaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATTGTTACAGGATCATCTCGGCAc          <  1:265408/142‑1 (MQ=12)
                                                                                                                                       aaGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGgt  >  2:457830/1‑150 (MQ=32)
                                                                                                                                           |                                                                                                                                                 
TTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT  >  REL606/588358‑588640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.