| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 3,338,108 | T→G | 100% | intergenic (+266/‑63) | prmA → / → yhdG | ribosomal protein L11 methyltransferase/tRNA‑dihydrouridine synthase B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 3,338,108 | 0 | T | G | 100.0% | 79.2 / NA | 23 | intergenic (+266/‑63) | prmA/yhdG | ribosomal protein L11 methyltransferase/tRNA‑dihydrouridine synthase B |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (12/11); total (12/11) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
AAATTCCTTTGAGTGTAAATTTTAGTCACTATTTTCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCATCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTACAGACAGACCTTTTCGGACG > REL606/3337975‑3338251 | aaaTTCCTTTGAGTGTAAATTTTAGTCACTATTTTCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTCCAGCGCGTGCAAAAAATGc > 1:429456/1‑150 (MQ=255) cTTTGAGTGTAAATTTTAGTCACTATTTTCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAata < 1:279834/150‑1 (MQ=255) gtgtAAATTTTAGTCACTATTTTCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATAcgcc > 2:607094/1‑150 (MQ=255) aTTTTCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTAt > 2:358048/1‑150 (MQ=255) tttCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATgg > 1:475899/1‑150 (MQ=255) tttCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATgg > 1:578078/1‑150 (MQ=255) ttCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGt < 2:526624/150‑1 (MQ=255) ttATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACa < 1:39039/150‑1 (MQ=255) gCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATc < 1:605318/150‑1 (MQ=255) gCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATc < 1:357020/150‑1 (MQ=255) gCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATc < 1:339554/150‑1 (MQ=255) cacGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCt < 2:477250/150‑1 (MQ=255) cATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGaaa < 2:579772/150‑1 (MQ=255) aTGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGa > 2:213411/1‑150 (MQ=255) tCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAAGCGCCTGATCGCAgc > 1:452229/1‑150 (MQ=255) cAGAGGATTGGTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGATATCGCCTCATCGCAGCGCCCATGGCTGGCa < 2:430678/150‑1 (MQ=255) ggTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCCTTacagaca > 1:148698/1‑150 (MQ=255) ggTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTacagaca > 2:364251/1‑150 (MQ=255) ggTCAAAGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTacagaca > 2:292915/1‑150 (MQ=255) aGTTTGGCCTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATCTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTACAGACAGACCtt > 2:232884/1‑150 (MQ=255) ccTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATCTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTACAGACAGACCTTTTCGGAc < 1:232224/150‑1 (MQ=255) cTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTACAGACAGACCTTTTCGGACg < 1:180168/150‑1 (MQ=255) cTTTCAGCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTACAGACAGACCTTTTCGGACg > 2:180680/1‑150 (MQ=255) | AAATTCCTTTGAGTGTAAATTTTAGTCACTATTTTCTAATATGATGATTTTTATGAGTAATTATCGCACCACGCTCATTTTAAATGCAATTCTTTGATCCATCTCAGAGGATTGGTCAAAGTTTGGCCTTTCATCTCGTGCAAAAAATGCGTAATATACGCCGCCTTGCAGTCACAGTATGGTCATTTCTTAACTCATGCGCATCGGACAATATCAGCTCAGAAATCGCCTGATCGCAGCGCCCATGGCTGGCATTACAGACAGACCTTTTCGGACG > REL606/3337975‑3338251 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |