New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664688 = | NA (NA) | 29 (1.090) | 25/278 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | = 2086925 | 0 (0.000) | intergenic (‑1346/‑199) | yegL/yegM | hypothetical protein/multidrug efflux system, subunit A |
GCGCCGATGTCGGTTCGTCAAACAGCATCGCAATAGGATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT > REL606/664543‑664833 | gcgcCGATGTCGGTTCGTCAAACAGCATCGCAATAGGATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc < 2:96274/150‑1 (MQ=255) gcgcCGATGTCGGTTCGTCAAACAGCATCGCAATAGGATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTAc < 2:242056/150‑1 (MQ=255) gATGTCGGTTCGTCAAACAGCATCGCAATAGGATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCAc < 2:558074/150‑1 (MQ=255) gTTCGTCAAACAGCATCGCAATAGGATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCAtttt > 1:189458/1‑150 (MQ=255) tCGTCAAACAGCATCGCAATAGGATCCATACACAACGCGCGAGCGCTTGCCACACGCTGCTGCTGACCGCCGGAAAGCCGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCACGACACGCTCACGCAGCTTTGTACTGCAACCATTttgc > 1:48118/1‑149 (MQ=255) aaaCAGCATCGCAATAGGATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGAc < 2:190000/150‑1 (MQ=255) gagacagtctaTACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAATCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGaa < 1:591207/140‑1 (MQ=255) gATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGCAACTTATTGGCGCGGGCAGAAAGCCCGAACCGCTCCAGCCGTTATGTACTTCACACACTTTGTGGGACGATGAAAGTGAATAAcc > 1:35458/1‑150 (MQ=255) gATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcc > 2:250928/1‑150 (MQ=255) aTCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc > 2:72290/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAATCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGATATGGaactgtctc > 2:592946/1‑143 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCCGCAGTTTTGTAATGCACCCATTTTGTTGGACGATGAAGTGGAATAGcccc > 1:630144/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 2:355987/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 2:652625/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:221249/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 2:92173/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 2:679400/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 2:215923/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:570862/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 2:571649/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:349636/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 2:192853/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCCCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcccc > 1:503211/1‑150 (MQ=255) tCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGACGGAAAGATGCGCCGGAAACCTATTGGCGTGAGCAGAAAACCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTTTTGGACGATCAAATGGAATAGcccc > 1:116509/1‑150 (MQ=255) ccATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCt > 2:432235/1‑150 (MQ=255) tACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 2:221878/150‑1 (MQ=255) tACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAat < 2:572527/150‑1 (MQ=255) acacAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata < 1:569986/150‑1 (MQ=255) cgagcgaTTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGcc < 2:504646/150‑1 (MQ=255) ccACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCt > 2:177875/1‑150 (MQ=255) ctgctactgACCGCGGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaa < 1:431010/150‑1 (MQ=255) gctgctgACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAg > 1:21486/1‑150 (MQ=255) gccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAg > 2:89846/1‑150 (MQ=255) ccgGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGt < 2:512385/150‑1 (MQ=255) gCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt < 1:89583/150‑1 (MQ=255) gCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAAt < 2:21555/150‑1 (MQ=255) ggAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACtt > 2:382561/1‑150 (MQ=255) ttATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAc < 2:116853/150‑1 (MQ=255) ggCGTGAGCAGCAAGCCCGACACGCTCCAGCCGTTTTGTACTGCACCCATTTTGTTCGACGATGAAATGGAATAGCCCCAAATATGTCAAAGCAAAAATACCCTTTTGAAAAGCGCCTTGAAGTCATGAATCACTACTTCACAACtgatg > 1:169949/1‑150 (MQ=17) ataGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTCTTGGACGACGAAATGGCATAGCCCCTAATATGTCAAAGCCAAAATACTCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACGACTTCACAACTGATGATGGTTACAgg < 1:662859/148‑1 (MQ=14) atgCCCGACACGCTCCCGCAGTTTTGTACTGCAACCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGa < 1:501604/148‑1 (MQ=255) cGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGatcatc < 1:177370/150‑1 (MQ=255) gACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAtct < 1:406028/150‑1 (MQ=255) cTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCAc > 1:407396/1‑150 (MQ=38) cTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCAc > 1:428179/1‑150 (MQ=38) gTTTTGTACTGCACCCATTTTGTTGGACTTTTAACAAGAATATCCCCTAACATGTCAAAGCCAAAATACCGTTTTGAAAAGCGCCTTGAAGTCGTTAATCAATACTTCAGAGCTGATGACAGTGACAGGACCAATTCTGCACGGTTTgat > 1:502312/1‑148 (MQ=2) gTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGgt > 2:621165/1‑150 (MQ=32) gTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGgt > 1:658434/1‑150 (MQ=32) gTTTTGTACTGCACCCATTTTGCTGGACGATGAAATGGAATAACGCCTAATATGTCAAAGCCAAAATACCCTTTTCAAAAGCGCCTTGAAGTAGTGAATCACTACTTCACAACGGGTTACGGTCACAGGACCATCTCGGCACGttatagt > 1:178043/1‑145 (MQ=11) gTTTTGTACTGCACCAATTTTGTTGGACGATGAAATGGAATAGCACCTAATATGTCAAAGACAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATTATCACGGCACGTTTTTgt > 1:643044/1‑150 (MQ=11) | GCGCCGATGTCGGTTCGTCAAACAGCATCGCAATAGGATCCATACACAACGCGCGAGCGATTGCCACACGCTGCTGCTGACCGCCGGAAAGCTGCGCCGGAAACTTATTGGCGTGAGCAGAAAGCCCGACACGCTCCAGCAGTTTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT > REL606/664543‑664833 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |