Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 1,733,865 | G→T | 100% | A301S (GCC→TCC) | pykF → | pyruvate kinase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 1,733,865 | 0 | G | T | 100.0% | 63.1 / NA | 20 | A301S (GCC→TCC) | pykF | pyruvate kinase |
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (8/12); total (8/12) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
AGAAGAAGTTATCTTCGCCCAGAAGATGATGATCGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACGCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTACCGACCGCGTGATGAACAGCCGTCTCGAGTTCAACAATG > REL606/1733723‑1734006 | agaagaAGTTATCTTCGCCCAGAAGATGATGATCGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCt < 2:76583/150‑1 (MQ=255) gaagTTATCTTCGCCCAGAAGATGATGATCGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGAc > 2:191405/1‑150 (MQ=255) gaagTTATCTTCGCCCAGAAGATGATGATCGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGAc < 2:657583/150‑1 (MQ=255) cTTCGCCCAGAAGATGATGATCGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGa < 2:355993/150‑1 (MQ=255) tCGCCCAGAAGATGATGATCTAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCTACCCAGTTGCTTGATTCCATGATCAAAAACCCACGCCCTACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACg < 1:532075/150‑1 (MQ=255) tCGCCCAGAAGATGATGATCGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCACATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACg < 1:81590/150‑1 (MQ=255) gaagaTGATGATCGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGAt > 2:669562/1‑150 (MQ=255) aagaTGATGATCGAAAAATGTATCCGTGCAAGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATg < 1:384590/150‑1 (MQ=255) aaaaaTGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAAt > 1:284462/1‑150 (MQ=255) tCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATGCCTGTCtcttatacacatctcc > 2:217013/1‑135 (MQ=255) ttATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAg > 2:107998/1‑150 (MQ=255) aCCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATc < 2:480041/150‑1 (MQ=255) aGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATgg < 2:179005/150‑1 (MQ=255) aaCCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTaccgac < 1:667593/150‑1 (MQ=255) aCTCGCGCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTACCGACCGCGTGATGAAc < 1:190858/150‑1 (MQ=255) cgcgCAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTACCGACCGCGTGATGAACAGc < 2:446863/150‑1 (MQ=255) gcAGAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTACCGACcgctgtctcttatacaca > 1:223647/1‑135 (MQ=255) gAAGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTACCGACCGCGTGATGAACAGCCGtctc > 2:615814/1‑150 (MQ=255) aaGCCGGTGACGTTGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTACCGACCGCGTGATGAACAGCCGTCTCg < 1:107684/150‑1 (MQ=255) ttGCAAACTCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTACCGACCGCGTGATGAACAGCCGTCTCGAGTTCAACAATg > 2:247497/1‑150 (MQ=255) | AGAAGAAGTTATCTTCGCCCAGAAGATGATGATCGAAAAATGTATCCGTGCACGTAAAGTCGTTATCACTGCGACCCAGATGCTGGATTCCATGATCAAAAACCCACGCCCGACTCGCGCAGAAGCCGGTGACGTTGCAAACGCCATCCTCGACGGTACTGACGCAGTGATG‑CTGTCTGGTGAATCCGCAAAAGGTAAATACCCGCTGGAAGCGGTTTCTATCATGGCGACCATCTGCGAACGTACCGACCGCGTGATGAACAGCCGTCTCGAGTTCAACAATG > REL606/1733723‑1734006 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |