Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	2999597	3048488	48892	43 [0]	[0] 27	[flu]–yghK	[flu],yeeR,ECB_02802,yafZ,ECB_02804,yeeS,yeeT,yeeU,yeeV,yeeW,ECB_02810,ECB_02811,ECB_02812,ECB_02813,ECB_02814,ECB_02815,ECB_02816,ECB_02817,ECB_02818,ECB_02819,ECB_02820,ECB_02821,ECB_02822,insB‑22,insA‑22,ECB_02825,ECB_02826,ECB_02827,ECB_02828,yghD,yghE,ECB_02831,ECB_02832,ECB_02833,ECB_02834,ECB_02835,ECB_02836,ECB_02837,ECB_02838,yghF,yghG,pppA,yghJ,yghK

ACACGCAGACGCAGAGTATCGTTAAGATGTCCATATTGTTGTTTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCAC  >  REL606/3048342‑3048635                                                                                                                                                    |                                                                                                                                                   caccaaaacgtgccgagatgatcctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaccc                                                                                                                                                  >  2:163935‑M2/148‑150 (MQ=255)            gccgagatgatcctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAAc                                                                                                                                       <  2:10378‑M2/14‑1 (MQ=255)            aagagacagatcctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAAc                                                                                                                                       <  1:118860‑M2/14‑1 (MQ=255)                     atcctgtaaccatcatcagttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGacaataaaacctgtctctt                                                                                                                              >  2:119208‑M2/128‑141 (MQ=255)                                       gttgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTaa                                                                                                            >  2:234548‑M2/110‑150 (MQ=255)                                         tgtgaagtagtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATg                                                                                                          <  2:306559‑M2/43‑1 (MQ=255)                                               gtagtgattcacgacttcaaggcgcttttcaacggggtattttggctttggcatattaggggctattccatttgatcgtcctacacaatgggtgcagcacaACCGACAATAAAACTTGTCGGGGCTTTTTTGACGTTATTAACAActttc                                                                                                    >  1:427617‑M2/102‑150 (MQ=255)                                                   tgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCtttt                                                                                                >  2:434445‑M2/98‑150 (MQ=255)                                                                         tttcaaaagggtattttggctttgacatattaggggctattccctttcatcgtccaacaatatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTGTTGCCGCTATTCATGCCTTTCTTTTTCGCGTAAACGCCAGGCGTGta                                                                          >  1:575653‑M2/76‑150 (MQ=255)                                                                                        ttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGtat                                                           <  2:137580‑M2/90‑1 (MQ=255)                                                                                        ttggctttgacatagtaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAACACTTGCCGGGGCGTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGTCGTGTAATAACGGTTCGGtat                                                           <  1:301711‑M2/90‑1 (MQ=255)                                                                                        gtgggtttgacgtatttggggctattccatttcatcgtccaaccaaatgggtgcagtacaCCCTACAATAAAGCTTGCCGGGGCTTGTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAAGAACGGTTCGGtat                                                           <  1:386373‑M2/90‑1 (MQ=255)                                                                                             tttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATTgcct                                                      >  1:347930‑M2/56‑149 (MQ=255)                                                                                             gagacagtattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCg                                                      <  2:411051‑M2/95‑1 (MQ=255)                                                                                               tgaaatattagtggctattccagttcatcttacaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGtt                                                    <  1:286819‑M2/97‑1 (MQ=255)                                                                                                    tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGtatagccgctgtctc                                               >  1:409873‑M2/49‑143 (MQ=255)                                                                                                    tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCt                                               >  2:571871‑M2/49‑150 (MQ=255)                                                                                                    tattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCt                                               >  2:633911‑M2/49‑150 (MQ=255)                                                                                                     attagggtctattccatttcatcgtcaaacaaaatgtgtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTGTTGACGCGATTAACTACTTTCTTTTTCGCGTAAACGCCAGGCCTGTCATAACGGTTCAGTATAGCCGTCTAGCTg                                              >  1:232413‑M2/48‑150 (MQ=255)                                                                                                     attaggggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTg                                              >  1:41076‑M2/48‑150 (MQ=255)                                                                                                           ggctattccatttcatcgtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTcat                                        >  1:493274‑M2/42‑149 (MQ=255)                                                                                                                            gtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAAt                       >  1:249398‑M2/25‑150 (MQ=255)                                                                                                                            gtccaacaaaatgggtgcagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAAt                       <  2:250109‑M2/126‑1 (MQ=255)                                                                                                                                          gtgcagtacaCCCGACAATAAAACTTGCCGGGGC‑TTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaa        >  2:555698‑M2/11‑150 (MQ=255)                                                                                                                                             cagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaaaa      >  1:166203‑M2/8‑150 (MQ=255)                                                                                                                                             cagtacaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTaaaa      >  2:67783‑M2/8‑150 (MQ=255)                                                                                                                                                 acaCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGcac  >  2:301579‑M2/4‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                   ACACGCAGACGCAGAGTATCGTTAAGATGTCCATATTGTTGTTTTAGGCCCGCTAGTAATGCGCTACGGGTATTTAATATTGTTAAACCCTGATAATCGCTCCGGTTATTTCCGGGATAAATGTACTACCGCAGTTACTATCATAGCCCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCAC  >  REL606/3048342‑3048635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑