New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 241699 =NA (NA)31 (1.190) 20/272 NT NA noncoding (443/768 nt) IS1 repeat region
?REL606 = 590471 NA (NA)noncoding (1977/1977 nt) IS150 repeat region

CAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACt‑gt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/241847‑241699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTCAGTTCGCTGG  <  REL606/590471‑590321
                                                                                                                                                                                                                                                                                                             
CAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCCTCCGGCATCCATATCACCCCGTCAAAGGGTGCCAGCGGGCTCATAAGACGCACCAGCCTCGCCATAGTGCGTTCAGCGCATACCTGCGCCACAAACGCCTTCCGGAGACT                                                                                                                                                         >  1:362027/1‑150
CAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACT                                                                                                                                                         >  1:520792/1‑150
CAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACT                                                                                                                                                         >  2:323930/1‑150
CAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCCTCATCCATATCACCACGTCAAAGGGAGACAGCAGGCGCATAAGGCGACCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGCCTTCAGGAGACT                                                                                                                                                         >  1:426429/1‑150
 gtataagagacagGGCGTGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTG                                                                                                                                                       <  2:535835/137‑1
 AGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTG                                                                                                                                                       <  2:539218/150‑1
 AGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTG                                                                                                                                                       <  2:408740/150‑1
  GCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGT                                                                                                                                                      >  2:177955/1‑150
              GGCGTGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGctgtctcttatac                                                                                                                                          >  1:534287/1‑137
                  GGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGT                                                                                                                                      >  2:94983/1‑150
                  GGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCAGGAGACTGTACTGACCCCAAAAAGT                                                                                                                                      >  1:298791/1‑150
                                 gtgtataagagacagCCATATCACCACGTCAACGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACAC                                                                                                                       <  1:683271/135‑1
                                    GCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAAAAACCGTCTTCCGGAGACTGTACTAACCCCAAAAAGTTGGACAATTAAACcggag                                                                                                                    >  1:662035/1‑145
                                        TCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGAACCCAAAAAGTTGGACAGTTAAACACGAGGCAT                                                                                                                >  1:507887/1‑150
                                             CATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG                                                                                                           <  1:94701/150‑1
                                               TCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC                                                                                                         <  2:509336/150‑1
                                                CCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACctgtctcttatacac                                                                                                        >  2:685278/1‑135
                                                           CGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCCTATAGGTCTGATTCCGATAT                                                                                             >  1:112679/1‑150
                                                           CGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATAT                                                                                             >  2:270639/1‑150
                                                                   GGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG                                                                                     >  1:650445/1‑150
                                                                   GGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGG                                                                                     >  1:14969/1‑150
                                                                     TGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG                                                                                   <  2:15018/150‑1
                                                                        CAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA                                                                                >  2:577515/1‑150
                                                                               CTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGAGTGTACTGACCACAAAAAGTTGGACAGTTACACACGAGGAATATAGGTCTGATTCCAAAAATCAATTGGAGTCAGACCTTT                                                                         >  1:347539/1‑150
                                                                               CTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTT                                                                         >  2:563707/1‑150
                                                                                 CATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTAGAGTCAGACCTTTTA                                                                       >  1:189367/1‑150
                                                                                                  TCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTT                                                      >  2:331429/1‑150
                                                                                                  TCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTT                                                      >  1:607623/1‑150
                                                                                                    GCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCTAAAAAATTGGACAGTTAAACACAAGGCATATAAGTCTGATTCCGATATTAAATTGGAGACAGACCTTTTAATTTCCGGCTAATTCTTCa                                                    >  1:495122/1‑149
                                                                                                    GCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACAGGAGGCATATAGGTCTGATTCGGATATTCAAGTGGAGTCAGACCTTTTAATTTCAGGATAATTATTCT                                                    >  1:372155/1‑150
                                                                                                    GCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTTGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCT                                                    >  1:441459/1‑150
                                                                                                      CATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGC                                                  >  1:254245/1‑150
                                                                                                              GTTCACCGAATACGTGCGCAACAACCGGCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACAAGGCATATAGGTCTGATTCCGATCTTCAATTAGAGTCAGACCTTGTAATTTCAGGCTAATTCTTCTGCTGTTGTAG                                          <  1:207075/150‑1
                                                                                                                      AATACGTGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAAT                                  <  2:652363/150‑1
                                                                                                                            tgtataagagacagCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTC                            <  1:89964/136‑1
                                                                                                                            TGCGCAACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCAGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTC                            <  2:555148/150‑1
                                                                                                                                  ACAACCGTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAAC                      <  1:114351/150‑1
                                                                                                                                        GTCTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATC                >  1:13832/1‑150
                                                                                                                                          CTTCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCtgtctcttataca              >  2:90227/1‑137
                                                                                                                                            TCCGGAGACTGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTC            >  2:654183/1‑150
                                                                                                                                               aGAGACTGGTACTGACCCCAAAAAGTTGGTCAGTTAAACACGAGTCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTGATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTCAG          <  1:156071/149‑1
                                                                                                                                                       GTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTCAGTTCGCTGG  >  2:158126/1‑150
                                                                                                                                                                                                                                                                                                             
CAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCAAAGGGTGACAGCAGGCTCATAAGACGCCCCAGCGTCGCCATAGTGCGTTCACCGAATACGTGCGCAACAACCGTCTTCCGGAGACt‑gt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/241847‑241699
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTCTTCTGCTGTTGTAGTATTCAATATATTCCGTAACAGCATCCTTCAGTTCGCTGG  <  REL606/590471‑590321

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.