New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	3651091 =	NA (NA)	20 (0.750)	14/278	NT	80.0%	noncoding (1/1443 nt)	IS150	repeat region
	?	REL606	= 4047675	5 (0.190)					coding (874/927 nt)	yihR	predicted aldose‑1‑epimerase

AGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3651222‑3651091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTAAGTTAAAAACAGC  <  REL606/4047675‑4047531                                                                                                                                                                                                                                                                                       gGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCAC                                                                                                                                 <  1:385965/149‑1  GATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACC                                                                                                                                >  2:387091/1‑150        CCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGT                                                                                                                          >  1:136475/1‑150        CCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCAGT                                                                                                                          >  1:478959/1‑150                                                              AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATC                                                                    <  2:440600/150‑1                                                                  GGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTG                                                                >  2:402933/1‑150                                                                               agGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCAC                                                   <  1:484028/148‑1                                                                                 GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACct                                                 >  2:485401/1‑148                                                                                 GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTC                                                 >  1:375120/1‑150                                                                                     TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGCCAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTA                                             >  2:42776/1‑150                                                                                     TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTA                                             >  2:286457/1‑150                                                                                      ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAA                                            >  1:68225/1‑150                                                                                       TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAA                                           >  1:532629/1‑150                                                                                                   CCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATG                               <  2:136867/150‑1                                                                                                    cagTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGGGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGT                              <  1:558620/147‑1                                                                                                    CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGT                              <  2:376208/150‑1                                                                                                    CATTTCATCGTCCAACAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGT                              <  2:534172/150‑1                                                                                                                   CAAAATGGGTGCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGCCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTA               >  2:630017/1‑150                                                                                                                             GCAGTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTAAGTTAAAAAC     <  1:42641/150‑1                                                                                                                             GCAGTACAGAATCAGGAAAACCGCACCGCCTGTGTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCATTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTAAGTTAAAAAC     <  1:486977/150‑1                                                                                                                                GTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTAAGTTAAAAACAGC  >  1:139015/1‑150                                                                                                                                GTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTAAGTTAAAAACAGC  >  2:51554/1‑150                                                                                                                                GTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTAAGTTAAAAACAGC  >  2:169936/1‑150                                                                                                                                GTACAGAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTAAGTTAAAAACAGC  >  1:272973/1‑150                                                                                                                                                                                                                                                                                       AGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  REL606/3651222‑3651091 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAATCAGGAAAACCGCACCGCCTGTTTTTTAATATTTACGGACAGAGAAAATAACTTGTATTGATTAGCAGTCAAAATCATTGAAGAACATTTCACTCGCTAAAGGCAACATTATGTATCTTCAATTTATTAAGTTAAAAACAGC  <  REL606/4047675‑4047531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.