New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 1974039 | NA (NA) | 14 (0.520) | 13/278 | NT | 93.3% | noncoding (768/768 nt) | IS1 | repeat region |
? | REL606 | 1982313 = | 1 (0.040) | coding (664/798 nt) | yeeI | hypothetical protein |
ATGCTGCAATGAACAACATTCAGGAAGAAATCGAATTGGTTGGCGAGAATGCGGCGAGCATTGATGCTTATGCTGCCAGTGATCCTGCTGAATGTTTTGCCGTACTTTCTGAATATTTCTTTAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATACAGACTCGTTTTCGGCGACGAATGTTCATTAATCAACAAC > REL606/1982191‑1982455 | ggcagcacctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGtt > 2:361457‑M2/123‑150 (MQ=255) acctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTGGACCCTCGTTCCCttt > 1:278085‑M2/117‑150 (MQ=255) acctggcacggctgggacggaagtcgctgtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacaatatcaataagttggagtcattaccAGCGCCCAAGAACTTTTTGCTACTCGTTTCACtt > 1:526813‑M2/117‑150 (MQ=255) gtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCCATTTTATCAACAAGATCCTTTg > 1:227878‑M2/73‑150 (MQ=255) tgcatgacaaagtcgtcgggcattatctgaacataaaacactatcaagaagttggagtcattgccAGCGCCCCGGAACTTTTTGCTCCTCGTTTCCCTTCAGTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGAc < 1:360419‑M2/85‑1 (MQ=255) gtcatcgggcattatcagaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCATCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGCTCATTTGCTGAGACTGCATCACGCt > 1:365398‑M2/55‑150 (MQ=255) cgggcattatctgaacataaaacactatccataatttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCACTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGa < 2:394823‑M2/101‑1 (MQ=255) ggcattatctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATa > 1:143085‑M2/48‑150 (MQ=255) gcattatctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATAc < 2:600699‑M2/104‑1 (MQ=255) cAGTGATCCTGCTGAATGTTTTGCCGTACTTTCTGAATATTTCTTTAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATAc > 1:202543/1‑150 (MQ=255) ttatctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATACAGa < 2:23466‑M2/107‑1 (MQ=255) atctgaacataaaacactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATACAGACt < 2:104610‑M2/109‑1 (MQ=255) cactatcaataagttggagtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATACAGACTCGTTTTCGGcgacg > 2:210692‑M2/28‑150 (MQ=255) gtcattaccAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATACAGACTCGTTTTCGTCGACGAATGTTCATTAatcaata > 1:481297‑M2/10‑148 (MQ=255) tcattacAGCGCCCCTGAACTTGTTGGTCCTCGTTTCCATTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTGGCTGAGACTGCATCTCGCTAATGTTACAGACTCGTTTTCGGCGACGAATGTTCATTAATCaacaac < 1:82031‑M2/143‑1 (MQ=255) | ATGCTGCAATGAACAACATTCAGGAAGAAATCGAATTGGTTGGCGAGAATGCGGCGAGCATTGATGCTTATGCTGCCAGTGATCCTGCTGAATGTTTTGCCGTACTTTCTGAATATTTCTTTAGCGCCCCAGAACTTTTTGCTCCTCGTTTCCCTTCATTGTGGCAACGTTTCTGCCAATTTTATCAACAAGATCCTTTGCTGAGACTGCATCACGCTAATGATACAGACTCGTTTTCGGCGACGAATGTTCATTAATCAACAAC > REL606/1982191‑1982455 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |