New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 666130	NA (NA)	15 (0.560)	8/278	NT	NA	noncoding (1443/1443 nt)	IS150	repeat region
	?	REL606	= 711957	NA (NA)					coding (102/1665 nt)	rhsC	rhsC element core protein RshC

GTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGCCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCA  >  REL606/711838‑712093                                                                                                                        |                                                                                                                                         gTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGCCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGc                                                                                                            >  2:227455/1‑150 (MQ=34) gTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGCCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGc                                                                                                            >  2:632369/1‑150 (MQ=34)        ggTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGCCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTcaca                                                                                                     >  2:59669/1‑150 (MQ=40)          tccctcccGGTGAAGCCGACGCAGCCCTGCCCGCCCTTCTGCCGTTCTTCCTCTCCCGCCCCTACTGCAGTTACCGGGCAAAGCCGCCCGCGCCGGTGGGCAGCCCCCGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGGGCAcacc                                                                                                   <  1:91211/150‑1 (MQ=11)          tCCTGCCCCGTGAAGCCGACATCTCCCTGCCCGGCCCGATGCCGTGCATCCGCTCCCGCCCCTCCGGCAGTTACCGGAGAAAAACGCCCACGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCAcacc                                                                                                   <  1:462172/150‑1 (MQ=14)            cTTCCCGGTGCAGCCGACATCGCCCTGCCCGCCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAACGCCTGCGGATAACCGGCGTTCAcaccac                                                                                                 <  1:527166/150‑1 (MQ=255)                                                              ctcCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTa                                               >  2:280917/1‑150 (MQ=255)                                                                cccGCACCTACAGCAGTTACCGGCCAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCCGCGTTCAAACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCCCAGCCCCAGCAGGTAAc                                             >  1:210053/1‑150 (MQ=21)                                                                agacagccTACAGCAGTTACCGGACAAAACCGCCCGCGCCGGTGGGGCGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATACCCGGCGTCCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAAc                                             <  1:87766/144‑1 (MQ=25)                                                                      ccTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAAcctgtct                                       >  2:88023/1‑145 (MQ=255)                                                                      ccTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTg                                       >  2:684523/1‑150 (MQ=255)                                                                      ccTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGACTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCCCACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTCACCGCCTg                                       >  2:616741/1‑150 (MQ=255)                                                                      ccTACACCCGTTACCGGACCACAACGCCCGCGCCGGTGCGGAGCCTCGGCCCCGGCGGGCAACCGCCTCCGGACCACCGGCGTTCCCCCCCCCGCAGCGAATCCGGACATCCCCATACCGAATGCCACAGACCCGGCAGGTAACCGcccg                                       >  1:28427/1‑148 (MQ=16)                                                                                   ccGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGc                          <  1:280117/150‑1 (MQ=255)                                                                                                     gcCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCAccc        <  2:210658/150‑1 (MQ=255)                                                                                                           ggggAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCa  <  2:653261/150‑1 (MQ=255)                                                                                                           ggggAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCa  >  1:651340/1‑150 (MQ=255)                                                                                                                        |                                                                                                                                         GTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGCCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATAACCGGCGTTCACACCACCGCAGCGAATCTGGATATCCGCATCCCGTATGCCACAGACCCGGCAGGTAACCGCCTGCCCGACCCGGAGCTGCACCCGGACAGCACCCTCAGCA  >  REL606/711838‑712093

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.