| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | REL606 | 45,662 | C→T | 100% | V155I (GTC→ATC) | caiT ← | L‑carnitine/gamma‑butyrobetaine antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 45,662 | 0 | C | T | 100.0% | 114.5 / NA | 37 | V155I (GTC→ATC) | caiT | L‑carnitine/gamma‑butyrobetaine antiporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (17/20); total (17/20) | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
GCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGACTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGGAGATGTAGTAGTAGATCTCAATCGATCCCCAGAAC > REL606/45517‑45810 | gcgAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGaa < 1:342477/150‑1 (MQ=255) gATCAAGGCGACGAGATAGAAGTTGTCGACGATCCTGCCGAACTACCCATCGACGTGTATTTCCCCTACCCGCGGCACGAGAGTCGCGATGGGCCGAATCACGTCCATTTTACGGACAAAGACGCAGTAAGCGACGGCGATTGAAAGGaa > 1:57050/1‑150 (MQ=255) gATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGaa > 2:172692/1‑150 (MQ=255) ggctagaTAGAAGTTGTCGACGATAGTGCCGAAGGACCCTGTGACGTGTCTTTCACCTACCAGCGGCACCAAGGTCGAGCTGGGGCGAATCACTGCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGAAAGt < 1:51500/146‑1 (MQ=255) gacgaGATAGAAGTTGTCGGCGATAGTGACGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGt < 1:367886/150‑1 (MQ=255) agaTAGAAGTTGTCGCCGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGcc < 1:292999/150‑1 (MQ=255) agaTAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGcc > 2:224595/1‑150 (MQ=255) agaTAGAAGTAGTCAACTAGAGTTCTGAACAACCCTCTCACGAGTTTTTCACCTACCAGCGGCAACAGTGTCGAGCTGGTGCGAATCACTGACACTTTGCGGACAAAGAAAAAGTAAGCGGAGGCGATTGAAAGGAAGCTGTAAGTGGca > 1:288183/1‑149 (MQ=255) gaTAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGccc > 2:108664/1‑150 (MQ=255) aGTTGTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCa > 2:590980/1‑150 (MQ=255) gTTGTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCag > 2:173595/1‑150 (MQ=255) gTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAgg < 1:172205/150‑1 (MQ=255) cgaTAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTcccc < 1:643975/150‑1 (MQ=255) gTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTgg > 2:485821/1‑150 (MQ=255) acaacCCTGTGACGTGTTTTTCACATGCCAGCGGCACCAGTGTCGAGCTGGGGCGAATAACTTCCATTTTGCGGACAAAGAGGAAGTAAGAGAAGGCGATTGAAAGGAAGCTGTAGGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGc < 1:604116/150‑1 (MQ=255) ccTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTaa > 2:570612/1‑150 (MQ=255) tttGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAagc < 2:289052/150‑1 (MQ=255) tttGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAagc < 1:589243/150‑1 (MQ=255) gtGACGTCTTTTTCTCCTACCAGCGGCACCAGTGTCGAGCTGGGGAGAATCACTTCCATTTTGCGGACCAAGAAGAAGTAAGCGCAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAagcc < 1:429815/149‑1 (MQ=255) gagacaggtTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAagcc < 1:201497/143‑1 (MQ=255) gtTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAagccctgtctc > 2:202078/1‑143 (MQ=255) tgtCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAAct < 2:28780/148‑1 (MQ=255) acatACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAGGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCttt < 1:38685/147‑1 (MQ=255) aCCTACAAGCGGCACCAGTGTCGAGCGGGGGCGAATCACTTCGATTGTGCGGACAAAGAAGAAGTAAGCCAAGGCGATTGAAAGGAAGCGGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCttt < 1:491644/150‑1 (MQ=255) cGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATGTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGAAGAGGTCCCCAGTGGAACAAGCGGGAAGCGAGGCCCAACTCTTTCGCGCCTGt > 1:388873/1‑150 (MQ=255) cACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGa > 1:187787/1‑150 (MQ=255) gtgtCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCg > 2:611304/1‑150 (MQ=255) gtgtCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCg > 2:33845/1‑150 (MQ=255) tgcgcagatgcACTTCAAGTTTACGGACCACGGAGAAGTAGGCGAAGGCGATTGAAAAGAGGCTTTAGGTGGACCTCGGCGGATGTCCCCCGTGCAACAAGCTGTAAGCTAGCCCCAACTCTTCCGCGCCTGTCGAGTTCGGTTCTAAGc < 1:321393/140‑1 (MQ=255) tGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGc < 2:419829/150‑1 (MQ=255) ggCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCaa > 2:468547/1‑150 (MQ=255) cACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAAcggcgg > 2:294717/1‑150 (MQ=255) ttttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGgaga < 1:164265/150‑1 (MQ=255) tttGCGGACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCGGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGGAGAt < 1:87089/150‑1 (MQ=255) gACAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTACCCAGTGGAACAAGCTGTAAGCCAACCCCAACTAAATCGCGACCGTCGAGTTCAGTTCTAAGCCAAACGGCGGGGCGGAGATgaagta > 1:56784/1‑150 (MQ=255) cAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGGAGATgtagtagt < 1:33750/150‑1 (MQ=255) cAAAGAAGAAGTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGGAGATgtagtagt > 1:387845/1‑150 (MQ=255) aagaagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGGAGATGtagtagtag < 2:122250/150‑1 (MQ=255) aagaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGGAGATGTAGTAGTAGAtc < 2:388977/150‑1 (MQ=255) gaagTAAGCGAAGGCGATTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGGAGATGTAGTAGTAGAtctc > 2:574004/1‑150 (MQ=255) gACCGAAA‑GAAGATGTAAGTAGCCAACAGCAGAGGTCCCTGGGTGAAGAAGCGTAAAGAGCCCCCCAACTCGTTGCCTCGTAACGGGGGCGGTACTACGCCAAACGGCGGGGTGGAGATGTGATCGTAGAGCACCATCGCTCCCCAGAAc < 1:518966/150‑1 (MQ=255) | GCGAAGATCAAGGCGACGAGATAGAAGTTGTCGACGATAGTGCCGAACAACCCTTTGACGTGTTTTTCACCTACCAGCGGCACCAGTGTCGAGCTGGGGCGAATCACTTCCATTTTGCGGACAAAGAAGAAGTAAGCGAAGGCGACTGAAAGGAAGCTGTAAGTGGCCCACGGCAGAGGTCCCCAGTGGAACAAGCTGTAAGCCAGCCCCAACTCTTTCGCGCCTGTCGAGTTCGGTTCTAAGCCAAACGGCGGGGTGGAGATGTAGTAGTAGATCTCAATCGATCCCCAGAAC > REL606/45517‑45810 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |