| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 664688 = | NA (NA) | 29 (1.090) | 25/278 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
| ? | REL606 | = 2086925 | 0 (0.000) | intergenic (‑1346/‑199) | yegL/yegM | hypothetical protein/multidrug efflux system, subunit A | |||||
ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664833‑664688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCAGGG < REL606/2086925‑2086778 ACCAAAGCCTGCCGAGATGATCCTTTAACCATCATCAGTTGTGTAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCGTTGACTTATTAGGGGCTATTCTATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG < 1:119155/150‑1ACCAAAACGTGCCGAGATGATCCTGTAACCCTCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG < 1:375976/150‑1ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTTGGGGCTATTCCATTTCATCGTCCAACAAAATGGGGGCAGTACAGAGG < 1:481974/150‑1ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG < 2:24747/150‑1ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG < 1:399086/150‑1ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG < 1:534438/150‑1ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG < 2:619331/150‑1ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG < 2:609559/150‑1ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGG < 2:47715/150‑1 AACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGC < 2:292105/150‑1 AACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGC < 2:492946/150‑1 ATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATA‑TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGG > 1:497435/1‑150 tccTCAGTTGTCGAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTCTTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGTGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGATGAAAC < 1:364470/147‑1 CATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGTCGCTGAAACG > 1:250629/1‑150 GTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGTTAAGCCGACGATTTCAGCGGGAAGCTGACACGGGAAAGCCCCTCC > 1:358477/1‑150 GTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCC > 2:206360/1‑150 TAGTTATTCGCGACTTCAAGGCGCTTTTCAAAAGGGTATTTTTGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCC < 1:649049/150‑1 AGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCG < 2:229243/150‑1 TTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAA < 2:326644/150‑1 attttaAAGGCGCATTTAAACAGAGTATTTTTGTTTTGACATATTCTGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGGCGACGGTTTCAGCGGGACGCTGAAACGGGAAAGCCCCCCCCGAGGAAGGGGC < 1:334328/144‑1 ACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCC > 2:644485/1‑150 TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGGCGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGTGCCAGCAACAAGGAAA > 1:431176/1‑150 CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGG < 2:432402/150‑1 TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATG < 2:359510/150‑1 TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCAT > 2:105716/1‑150 ATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATC > 2:104743/1‑150 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCG > 2:107241/1‑150 TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTAAAACGGGAAAGCACCTCCCGAGAAAGGGGCCAGAAATAACGAAAGGGTAAGGATGAAGATAaccaaccacc > 1:658931/1‑140 TTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTG > 2:445547/1‑150 TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAG < 2:498847/150‑1 CATTTCTTCGTCCAATAAAATGGGTGCAGTACATAGGTAAGCCGACGATTTCACCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGACATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGA < 1:642598/150‑1 TCCAACAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCC < 2:349686/150‑1 aAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCCGCGGGACGCTGTAACTGGAACGCCCCTCCCGCGGAAGGGGCTATAAATACGGAAAGGGTCATGATGAAGATACTAATCATCGTGGTGCTCTTAGTGACTTTCTACCCAGCAT < 1:659741/149‑1 CAAAATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCAT < 2:251344/150‑1 AATGGGTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCACTCCAGAGGAAGGGGCCATAAATAAGGAAAGGGTCCTGATGTAGATACTCATCATCGTGGTGCTATTAGTGATTAGCTACCCAGCATAgt > 1:12004/1‑148 GGGGGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAG < 1:105410/150‑1 GTGCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGAC < 2:358133/150‑1 GCAGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTA > 2:671881/1‑150 gGTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACC < 2:538666/149‑1 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAGGGGGCCATAAATAAGGCAAGGGTCATGATGACGATACTCATCATCGTGGTGCTCTTAGTCATTAGCTTCCCGGCATACTAAGACctcta > 1:416577/1‑145 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCGTAAATAAGGACAGGGTCATGAGGCAAATGCTCATCATCGTGGTGCGCTGAGTGATTAGCTACCCAGCATACTAGGACGACCA > 1:535307/1‑150 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTCGCTACCCAGCATACTAAGACTACCA > 2:629994/1‑150 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCc > 1:537111/1‑149 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCA > 2:532868/1‑150 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCA > 2:58561/1‑150 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCA > 2:133168/1‑150 GTACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCA > 2:111295/1‑150 ACAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCAGG > 1:357886/1‑150 CAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCAGGG < 2:293289/150‑1 CAGAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCCACCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCAGGG < 1:531328/150‑1 ACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664833‑664688‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GAGGTAAGCCGACGATTTCAGCGGGACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGATACTCATCATCGTGGTGCTCTTAGTGATTAGCTACCCAGCATACTAAGACTACCAGGG < REL606/2086925‑2086778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |