New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | 664688 = | NA (NA) | 29 (1.090) | 25/278 | NT | 100% | noncoding (1/1443 nt) | IS150 | repeat region |
? | REL606 | = 2086925 | 0 (0.000) | intergenic (‑1346/‑199) | yegL/yegM | hypothetical protein/multidrug efflux system, subunit A |
CCCTGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCATGCAAGCAGTCTATCGCTAACGCGTAGATAAAATAGTTTCCTGTGTTATTACTGGATGCGTGCTCGCAAATGTGCCCGCCATTCAGACGATTCCCGATAGTGTTTCATAATTCCTCCATTTTTCTCCCTTATTGGCT > REL606/2086778‑2087071 | cccTGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGTGGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtg < 1:531328‑M2/150‑3 (MQ=255) cccTGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtg < 2:293289‑M2/150‑3 (MQ=255) ccTGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgt > 1:357886‑M2/1‑147 (MQ=255) tagaggtcttaGTATGCCGGGAAGCTAATGACTAAGAGCACCACGATGATGAGTATCGTCATCATGACCCTTGCCTTATTTATGGCCCCCTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtac > 1:416577‑M2/6‑145 (MQ=255) tGGTCGTCCTAGTATGCTGGGTAGCTAATCACTCAGCGCACCACGATGATGAGCATTTGCCTCATGACCCTGTCCTTATTTACGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtac > 1:535307‑M2/1‑145 (MQ=255) tGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtac > 2:532868‑M2/1‑145 (MQ=255) tGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtac > 2:133168‑M2/1‑145 (MQ=255) tGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtac > 2:58561‑M2/1‑145 (MQ=255) tGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtac > 2:111295‑M2/1‑145 (MQ=255) tGGTAGTCTTAGTATGCTGGGTAGCGAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtac > 2:629994‑M2/1‑145 (MQ=255) gggtAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtac > 1:537111‑M2/2‑145 (MQ=255) ggTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtacc < 2:538666‑M2/150‑7 (MQ=255) tAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgc > 2:671881‑M2/1‑142 (MQ=255) gTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcac < 2:358133‑M2/150‑11 (MQ=255) cTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgccccc < 1:105410‑M2/150‑13 (MQ=255) actatGCTGGGTAGCTAATCACTAATAGCACCACGATGATGAGTATCTACATCAGGACCCTTTCCTTATTTATGGCCCCTTCCTCTGGAGTGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccatt > 1:12004‑M2/3‑135 (MQ=255) aTGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttg < 2:251344‑M2/150‑19 (MQ=255) aTGCTGGGTAGAAAGTCACTAAGAGCACCACGATGATTAGTATCTTCATCATGACCCTTTCCGTATTTATAGCCCCTTCCGCGGGAGGGGCGTTCCAGTTACAGCGTCCCGCGGAAATCGTCGGCTTACCTCtgtactgcacccattttt < 1:659741‑M2/150‑19 (MQ=255) gggTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttgga < 2:349686‑M2/150‑24 (MQ=255) tCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGTCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGGTGAAATCGTCGGCTTACCTAtgtactgcacccattttattggacgaagaaatg < 1:642598‑M2/150‑34 (MQ=255) cTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaa < 2:498847‑M2/150‑37 (MQ=255) cacGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaa > 2:445547‑M2/1‑104 (MQ=255) ggtggttggttatcttcatccTTACCCTTTCGTTATTTCTGGCCCCTTTCTCGGGAGGTGCTTTCCCGTTTTAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaata > 1:658931‑M2/11‑102 (MQ=255) cGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaata > 2:107241‑M2/1‑102 (MQ=255) gatgatGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatat > 2:104743‑M2/1‑101 (MQ=255) atgaGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtca > 2:105716‑M2/1‑97 (MQ=255) catcatGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaata < 2:359510‑M2/150‑65 (MQ=255) cccTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttg < 2:432402‑M2/150‑73 (MQ=255) tttCCTTGTTGCTGGCACCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGCCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaa > 1:431176‑M2/1‑75 (MQ=255) ggCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagt > 2:644485‑M2/1‑62 (MQ=255) gCCCCTTCCTCGGGGGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAACCGTCGCCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccagaatatgtcaaaacaaaaatactctgtttaaatgcgcctttaaaat < 1:334328‑M2/150‑90 (MQ=255) ttCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaa < 2:326644‑M2/150‑95 (MQ=255) cGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcact < 2:229243‑M2/150‑100 (MQ=255) gggAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagcaaaaatacccttttgaaaagcgccttgaagtcgcgaataacta < 1:649049‑M2/150‑101 (MQ=255) ggAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactac > 2:206360‑M2/1‑49 (MQ=255) ggAGGGGCTTTCCCGTGTCAGCTTCCCGCTGAAATCGTCGGCTTAACTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactac > 1:358477‑M2/1‑49 (MQ=255) cGTTTCAGCGACCCGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatg > 1:250629‑M2/1‑36 (MQ=255) gTTTCATCGTCCCGCTGAAATCGTCGGCTTACCTCtgtactgcacacattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaagacccttttgaaaagcgccttgaagtcgtgaatcactactcgacaactgagga < 1:364470‑M2/150‑116 (MQ=255) ccGCTGAAATCGTCGGCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggat > 1:497435‑M2/1‑24 (MQ=255) gCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgtt < 2:292105‑M2/150‑142 (MQ=255) gCTTACCTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgtt < 2:492946‑M2/150‑142 (MQ=255) ccTCtgtactgcccccattttgttggacgatgaaatggaatagccccaaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttggt < 1:481974‑M2/150‑147 (MQ=255) ccTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttggt < 2:24747‑M2/150‑147 (MQ=255) ccTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttggt < 2:619331‑M2/150‑147 (MQ=255) ccTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttggt < 2:47715‑M2/150‑147 (MQ=255) ccTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttggt < 2:609559‑M2/150‑147 (MQ=255) ccTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttggt < 1:399086‑M2/150‑147 (MQ=255) ccTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgatggttacaggatcatctcggcacgttttggt < 1:534438‑M2/150‑147 (MQ=255) ccTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactacttcacaactgatgagggttacaggatcatctcggcacgttttggt < 1:375976‑M2/150‑147 (MQ=255) ccTCtgtactgcacccattttgttggacgatgaaatagaatagcccctaataagtcaacgccaaaatacccttttgaaaagcgccttgaagtcgtgaatcactactacacaactgatgatggttaaaggatcatctcggcaggctttggt < 1:119155‑M2/150‑147 (MQ=255) | CCCTGGTAGTCTTAGTATGCTGGGTAGCTAATCACTAAGAGCACCACGATGATGAGTATCTTCATCATGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTCGGCTTACCTCCTTTCGCCATGCAAGCAGTCTATCGCTAACGCGTAGATAAAATAGTTTCCTGTGTTATTACTGGATGCGTGCTCGCAAATGTGCCCGCCATTCAGACGATTCCCGATAGTGTTTCATAATTCCTCCATTTTTCTCCCTTATTGGCT > REL606/2086778‑2087071 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |