New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 666130	NA (NA)	15 (0.560)	8/278	NT	NA	noncoding (1443/1443 nt)	IS150	repeat region
	?	REL606	= 711957	NA (NA)					coding (102/1665 nt)	rhsC	rhsC element core protein RshC

CTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑T‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATACCATCCCGACGCGGGAACGCAGCTTTGCC  >  REL606/665998‑666272                                                                                                                                     |                                                                                                                                                 cTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCa                                                                                                                                >  2:182506/1‑150 (MQ=255)         gAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCgg                                                                                                                        >  2:446563/1‑150 (MQ=255)             atatTGAATACTACAACAGCAGAAGAATTAGCCTGAATTTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑TGTTCAGGGCTTTTTCACGAGCCGGCGCt                                                                                                                    >  2:408989/1‑150 (MQ=255)             atatTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCt                                                                                                                    <  1:181981/150‑1 (MQ=255)               atTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCttt                                                                                                                  >  2:140619/1‑150 (MQ=255)                       ctacAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTACCGCGtt                                                                                                          >  1:275438/1‑150 (MQ=255)                             cagcagAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCa                                                                                                    <  2:638079/150‑1 (MQ=255)                                     gaaTTAGCCTGGAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc                                                                                            <  1:104836/150‑1 (MQ=255)                                     gaaTTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc                                                                                            <  2:8900/150‑1 (MQ=255)                                     gaaTTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc                                                                                            >  2:46963/1‑150 (MQ=255)                                     gaaTTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCAcc                                                                                            >  1:8871/1‑150 (MQ=255)                                                aaaTTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGt                                                                                 <  1:382018/150‑1 (MQ=255)                                                  aTTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCa                                                                               >  2:550319/1‑150 (MQ=255)                                                         ggTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTc                                                                        >  2:123181/1‑150 (MQ=255)                                                          gTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCg                                                                       >  2:557372/1‑150 (MQ=255)                                                                  ccAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGa                                                               >  1:611250/1‑150 (MQ=255)                                                                        gAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATg                                                         <  1:140217/150‑1 (MQ=255)                                                                             tCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGa                                                    <  1:255955/150‑1 (MQ=255)                                                                               ggAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAAc                                                  <  2:302056/150‑1 (MQ=255)                                                                                      gACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGa                                           >  2:461993/1‑150 (MQ=255)                                                                                       aCCTATATGCCTCGTGTTTAACTGTCCAACTCTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCTACAGATGGGGGAACAGCTCGaa                                          <  2:431206/150‑1 (MQ=38)                                                                                          tataTGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATg                                       >  1:620840/1‑150 (MQ=255)                                                                                                   cttgtTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACATCTCGAAATGCTGGAATAc                              <  1:555763/148‑1 (MQ=255)                                                                                                   cGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATAc                              <  2:622660/150‑1 (MQ=255)                                                                                                    gtgtTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATAcc                             >  1:355695/1‑150 (MQ=255)                                                                                                      gtTTAACTGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATACCAt                           <  2:637663/150‑1 (MQ=255)                                                                                                             tGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGTTTTTTCACTAGCCGGGGCTTTATCGCGTTTAAGCACTTTAGCCTGCTCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATACCATACCGAcg                    <  1:102739/150‑1 (MQ=255)                                                                                                             tGTCCAACTTTTTGGGGTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATACCATCCCGAcg                    <  2:613042/150‑1 (MQ=255)                                                                                                                            ggTCAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATACCATCCCGACGCGGGAACGCAGCttt     >  2:65896/1‑150 (MQ=255)                                                                                                                               cAGTACATT‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATACCATCCCGACGCGGGAACGCAGCTTTGcc  <  1:122822/150‑1 (MQ=255)                                                                                                                                     |                                                                                                                                                 CTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑T‑TTCAGGGCTTTTTCACGAGCCGGCGCTTTATCGCGTTTAAGCACTTTCACCTGCGCCAGGGTCAGGTTTTCGATAATCGACAGATGAGGGAACAGCTCGAAATGCTGGAATACCATCCCGACGCGGGAACGCAGCTTTGCC  >  REL606/665998‑666272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.