| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | 100% | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 30 [0] | [0] 36 | yfcTU | predicted outer membrane export usher protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2397528 | 0 (0.000) | 21 (0.790) | 18/276 | NT | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
| * | ? | REL606 | 2397543 = | 0 (0.000) | 30 (1.140) | 21/274 | NT | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
| ? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region | |||||
GTTTCGTATTCAGGATCTTGGTGATTCCATCTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2397691‑2397543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT < REL606/2775877‑2775732 GTTTCGTATTCAGGATCTTGGTGATTCCATCTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAT > 1:118903/1‑150 TTTCGTATTCAGGATCTTGGTGATTCCATCTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATG < 2:119251/150‑1 CGTATTCACGATCTTGGTGATTTCATCTCCGGTACGTTGCAGGTTCGCAGTGAAGAACAGAACGGCCAGGTGCAGAAATATGACAGCAGCACCGCCTCGATGCAATACCTAACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTAC < 1:629366/150‑1 TATTCAGGATCTTGGTGATTCCATCTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTG < 2:5724/150‑1 TTCAGGATCTTGGTGATTCCATCTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACAGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCA > 1:587395/1‑150 TCAGGATCTTGGTGATTCCATCTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCGTGATGTACTGCAC < 2:55284/150‑1 TCAGGATCTTGGTGATTCCAGCTCCGGTACGTGGCAGGTTCGCATTGAAGAACAGAACGGCCAGGTGCGTGAATATGCCCTCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCAC < 1:211084/150‑1 ATCTTGGTGATTCCATATCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATCAAATCAGCACCGCATCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCAGGATGTACTGCACCCATT > 1:155868/1‑150 tgtTGATTCCATTTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGT < 2:156310/147‑1 TGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC < 2:417415/150‑1 TTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 2:9977/150‑1 TTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 2:422994/150‑1 TTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA > 2:351807/1‑150 GAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGTCCAGGTTCGTTATAAAGTCATGATTTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAcaa > 1:311735/1‑147 GAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATA > 2:586489/1‑150 GGCCAGGTGCAGGAATATGACATCAGCCCCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCT < 1:584771/150‑1 GAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGC > 2:168734/1‑150 CATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGT > 2:531663/1‑150 ATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAGAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTC > 2:396246/1‑150 ATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTC > 1:434154/1‑150 ATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTC > 2:83282/1‑150 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCAC > 2:239581/1‑150 GCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCAC > 2:65261/1‑150 ATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAC < 1:530126/150‑1 ATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAC < 2:390550/150‑1 ACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTG > 2:453480/1‑150 TTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATG > 2:654244/1‑150 CGCCCAGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGT > 2:180507/1‑150 AGGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAG < 2:589127/150‑1 GGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCTTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGG > 1:113070/1‑150 GGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGG > 2:488925/1‑150 GGCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGG > 2:380326/1‑150 GCCAGGTTCGTTATAAAGTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGA < 1:350801/150‑1 GTCATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTT > 1:595224/1‑150 CATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGG < 2:596978/150‑1 ATGATGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT > 2:257643/1‑150 GTTTCGTATTCAGGATCTTGGTGATTCCATCTCCGGTACGTTGCATGTTCGCATTGAAGAACAGAACGGCCAGGTGCAGGAATATGACATCAGCACCGCCTCGATGCCATACCTTACTCGCCCAGGCCAGGTTCGTTATAAAGTCATGAtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2397691‑2397543‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTCGGCACGTTTTGGT < REL606/2775877‑2775732 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |