Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 1,207,861 T→G 100% N47T (AAC→ACC)  ycfC ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6061,207,8610TG100.0% 117.6 / NA 34N47T (AAC→ACC) ycfChypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (12/22);  total (12/22)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

AGCACCATCAGGCTGAGTGTGTAGCGGGTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTC  >  REL606/1207717‑1207992
                                                                                                                                                |                                                                                                                                   
aGCACCATCAGGCTGAGTGTGTAGCGGGTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCCCAGGTTTGCTTCGCTACCGCCAAAGACCGCCAGCGTCGAGCCGGGGGTCata                                                                                                                                >  1:346364/1‑150 (MQ=255)
 gCACCATCAGGCTGAGTGTGTAGCGGGTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCatat                                                                                                                               >  2:161641/1‑150 (MQ=255)
    ccATCAGGCTGAGTGTGTAGCGGGTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTctgtctct                                                                                                                            >  2:120746/1‑143 (MQ=255)
          gtgtataagagacaggggTTAACTCAGCGTTTAAGCCCTGGGTACTGCTGGCAGTGAGCCCGCCGAGAAAGGTTTCCTGCCCAACGCGCAGGTTGGCTTCGCTACCGCCAAAAGCCGCCAGCGTCGTGCTGGGGGTCATATCAATAATAc                                                                                                                      <  1:237053/135‑1 (MQ=255)
          ggCTGAGTGTGTAGCGGGTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGGGCAGGCTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCCATAATAc                                                                                                                      >  1:315900/1‑150 (MQ=255)
          ggCTGAGTGTGTAGCGGGTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATAc                                                                                                                      <  2:297712/150‑1 (MQ=255)
                gtgtgtAGCGGGTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTtga                                                                                                                >  2:240722/1‑150 (MQ=255)
                        cGGGTTAACTCTGCGTTTAAGCCCTGGCGGCTGCGGGCATTGTGCACGCCGGGCAAGGGTTCCAGCCCGACTCGCAGGTTGGCTTCGCTACCGCCAAAAGCCGCCAGCGTGGAGCGGGGGGTCATGTCAATAATACTGTTGAGTGAGACg                                                                                                        <  1:257630/150‑1 (MQ=255)
                         gggTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATAcctgtctcttatacac                                                                                                       >  2:237726/1‑135 (MQ=255)
                          ggTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACgtg                                                                                                      >  1:106818/1‑150 (MQ=255)
                          ggTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACgtg                                                                                                      >  2:301852/1‑150 (MQ=255)
                               aCTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAgcg                                                                                                 <  1:300996/150‑1 (MQ=255)
                                ctctGCGTTTAAGCCCTGGCGACTGCTGGCACTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCGTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAgcgc                                                                                                <  1:87361/150‑1 (MQ=255)
                                cTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAgcgc                                                                                                <  2:386362/150‑1 (MQ=255)
                                     cGTTTAAGCCCTGGCGACTGCTGGCATTGAGCCCGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGCTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGGGACGTGTAACGCATCgg                                                                                           >  1:341698/1‑150 (MQ=255)
                                      gTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATTGGc                                                                                          >  2:653826/1‑150 (MQ=255)
                                      gTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGc                                                                                          >  2:294462/1‑150 (MQ=255)
                                                      ctgctgGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTgg                                                                          >  1:147382/1‑150 (MQ=255)
                                                        gctgGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTg                                                                        <  2:347356/150‑1 (MQ=255)
                                                        gctgGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTg                                                                        <  2:342677/150‑1 (MQ=255)
                                                        gctgGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTg                                                                        <  2:104636/150‑1 (MQ=255)
                                                        gccggCATTGGGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTTGTGTAAATAAGACTGTTGAGTGAGACGCGTAGCGCATCGGCATCGCAATGCCCCTGGtt                                                                        <  1:651905/147‑2 (MQ=255)
                                                             cATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGa                                                                   <  2:147807/150‑1 (MQ=255)
                                                                       gCCGAGGAAGGCTTCCAGCCCGACGCGCAGGTTGGGCTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCATTAATACTGTTGAGTGAGACGTGTAGCGCACCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCAc                                                         <  1:293628/150‑1 (MQ=255)
                                                                             cAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCg                                                   <  2:37749/150‑1 (MQ=255)
                                                                                              gccggaGGCTGGCTGCGCTACCGGCAAAGACCGCCAGCGTCTAGCTGGGGGGCAGATCAATACTACGGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCCCCATGCGTGCCGACTGACAAATat                                  <  1:226715/145‑2 (MQ=255)
                                                                                               gcgcAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATAcc                                 <  2:107130/150‑1 (MQ=255)
                                                                                                   aGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGcc                             <  2:336792/150‑1 (MQ=255)
                                                                                                             gagacaggCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAggg                   <  2:410549/143‑1 (MQ=255)
                                                                                                             gagacaggCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAggg                   <  2:274034/143‑1 (MQ=255)
                                                                                                              gcaaCCGCCAAAAACCGCCAGCGTCGAGCGGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGt                  <  2:682654/147‑1 (MQ=255)
                                                                                                                   cGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGt             <  2:21980/150‑1 (MQ=255)
                                                                                                                   cGCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGt             <  2:316793/150‑1 (MQ=255)
                                                                                                                    gCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAgggctgtctc            >  1:273256/1‑143 (MQ=255)
                                                                                                                    gCCAAAAACCGCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAgggctgtctc            >  1:409375/1‑143 (MQ=255)
                                                                                                                              gCCAGCGTCGAGCTGGGGGTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTc  <  2:43904/150‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                   
AGCACCATCAGGCTGAGTGTGTAGCGGGTTAACTCAGCGTTTAAGCCCTGGCGACTGCTGGCATTGAGCACGCCGAGCAAGGTTTCCAGCCCGACGCGCAGGTTGGCTTCGCTACCGCCAAAAACCGCCAGCGTCGAGCTGGGGTTCATATCAATAATACTGTTGAGTGAGACGTGTAGCGCATCGGCATCACAATGCCCCTGGTGAGCGAGTTGTTGCACCAGGCGTGCCGACTGACAAATACCGGCCAGGGCGAGGGTGATGTCATAGTAATTC  >  REL606/1207717‑1207992

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: