Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | REL606 | 588,490:1 | +AA | 100% | intergenic (‑217/‑52) | ybdK ← / → insJ‑1 | gamma‑glutamyl:cysteine ligase/IS150 hypothetical protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | REL606 | 588,490 | 1 | . | A | 100.0% | 72.9 / NA | 22 | intergenic (‑217/‑52) | ybdK/insJ‑1 | gamma‑glutamyl:cysteine ligase/IS150 hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (12/10); total (12/10) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. | |||||||||||
* | REL606 | 588,490 | 2 | . | A | 100.0% | 72.1 / NA | 22 | intergenic (‑217/‑52) | ybdK/insJ‑1 | gamma‑glutamyl:cysteine ligase/IS150 hypothetical protein |
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (12/10); total (12/10) | |||||||||||
Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
TTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTC > REL606/588352‑588627 || ttCTTTTTTTTGGTGATGGTTAACTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaagttgtac < 1:222932/150‑10 (MQ=255) ttCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑aaaagttgtac < 2:608947/150‑10 (MQ=255) tttttGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCAcc > 2:55864/1‑150 (MQ=255) aaCTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGa > 2:266160/1‑150 (MQ=255) aaGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGcc > 2:580496/1‑150 (MQ=255) aGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc < 2:653835/150‑1 (MQ=255) aGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGccc < 2:154589/150‑1 (MQ=255) ttGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAata < 2:630417/150‑1 (MQ=255) tGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAatat < 1:607318/150‑1 (MQ=255) gtgACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATCTGTctcttatacacatc > 2:342964/1‑137 (MQ=37) gtgACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAc > 2:262268/1‑150 (MQ=255) gtgACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTCACGATTTAGCCATGAAAAAAAAAACGGGTGCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATAAACCGGAATAGCCCCTAATTTGTAGAATCCAAAATaa > 1:82312/1‑149 (MQ=21) aGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt > 2:522061/1‑150 (MQ=255) aGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCtttt > 2:138470/1‑150 (MQ=255) aGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAAAGCCCCTAATATGTCAAAGCCAAAATACCCtttt > 2:606232/1‑150 (MQ=255) gTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTg > 1:399497/1‑150 (MQ=255) aTGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaa < 1:578798/150‑1 (MQ=255) tGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGaaaa > 1:272447/1‑150 (MQ=255) gACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTcac < 2:400651/150‑1 (MQ=255) gtgtGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAc < 1:309666/147‑1 (MQ=255) gATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAAc < 1:34594/150‑1 (MQ=255) gAGTCATGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACtgat > 2:180706/1‑150 (MQ=255) tGCAGAAAAAAACGGGTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGt < 1:520563/150‑1 (MQ=255) ggTTCAGCTTCAAAAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCAtctc < 1:55700/150‑1 (MQ=255) || TTCTTTTTTTTGGTGATGGTGAACTGATGGTGCCTGAAGCAATTTGGCTACTTTTGCAATGTGACAAGTTATGGCAGTGCTGACTGGTGGCGAAGAATTTTGACGATTGAGTCATGCAGAAAAAAACGGGTTCAGCTTC‑‑AAGTTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAGCGCCTTGAAGTCGTGAATCACTACTTCACAACTGATGATGGTTACAGGATCATCTC > REL606/588352‑588627 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |