| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2263507 | NA (NA) | 30 (1.120) | 20/278 | NT | 81.1% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | REL606 | 2267039 = | 7 (0.260) | coding (297/1827 nt) | atoS | sensory histidine kinase in two‑component regulatory system with AtoC | |||||
GTCAACCTGCTTAATCAGGCGCTAGGCAATCGCTACGATCTCTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTC > REL606/2266905‑2267182 | gTCAACCTGCTTAATCAGGCGCTAGGCAATCGCTACGATCTCTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTTATTac < 2:266143/150‑1 (MQ=255)gTCAACCTGCTTAATCAGGCGCTAGGCAATCGCTACGATCTCTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTTATTac < 2:428862/150‑1 (MQ=255) gCTTAATCAGGCGCTAGGCAATCGCTACGATCTCTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTAAATACAACAAAAc > 1:469377/1‑150 (MQ=255) gcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGc > 2:368742‑M2/125‑150 (MQ=255) aTCAGGCGCTAGGCAATCGCTACGATCTCTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTTATTACAACAAAACGCTgg > 1:678139/1‑150 (MQ=255) gttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGa > 2:194961‑M2/116‑150 (MQ=255) gttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGa > 2:337294‑M2/116‑150 (MQ=255) cgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAAt > 2:214319‑M2/112‑150 (MQ=255) caccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCa > 2:230151‑M2/110‑150 (MQ=255) accccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTa < 1:336328‑M2/45‑1 (MQ=255) ccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTAc > 2:450024‑M2/105‑150 (MQ=255) tctcTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTc < 2:528581/150‑1 (MQ=255) ataagagacagggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTc < 2:234859‑M2/54‑1 (MQ=255) tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAgcgc < 1:194400‑M2/59‑1 (MQ=255) gaacaggagggacagctgatagaaacagaagccactggagcacctcaaacacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTACTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCt > 1:490853‑M2/91‑150 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTatat < 1:367677‑M2/64‑1 (MQ=255) ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACctacgcgccttcctgtctcttat > 1:234192‑M2/86‑139 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGaa < 2:525437‑M2/69‑1 (MQ=255) gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATg < 2:18764‑M2/74‑1 (MQ=255) gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATg > 2:50109‑M2/77‑150 (MQ=255) agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCa < 2:208974‑M2/86‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggccgcatcaccCCGCGCTGGTTATTACAACACAACGCTGGATTCGATAATCACCTAAGCGCCTTCAGCGCTATATCAGAATAATGTCTGCGTTACTATTGACgcagataagac > 1:651063‑M2/49‑145 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCAccc > 1:318263‑M2/49‑150 (MQ=255) agcatacactaaatcagtaagttggcagcatcaccCGGCGCTGGATATTACAACAAAACGCTGGATGAGATAATCACCTCCGCGCCTTCAGCGCTATAACAGAATAATGTCGGCGTTAACATTTCCGCCGATCACCCTGGTCGCTAAGTc > 1:117924‑M2/36‑150 (MQ=255) cactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGt > 2:215614‑M2/30‑150 (MQ=255) cactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGt > 1:13349‑M2/30‑150 (MQ=255) cactaaatcagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGt > 2:158780‑M2/30‑150 (MQ=255) cagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATAc > 2:610065‑M2/22‑150 (MQ=255) cagtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACACTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATAc < 2:566216‑M2/129‑1 (MQ=255) gtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATAccc < 1:49958‑M2/131‑1 (MQ=255) gtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATAccc < 2:13393‑M2/131‑1 (MQ=255) gtaagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATAccc < 1:213705‑M2/131‑1 (MQ=255) ctcacGCCTTCCCTGGCATCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATAccc > 2:24512/1‑150 (MQ=255) taagttggcagcatcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATAcccc < 1:114315‑M2/132‑1 (MQ=255) cccTGGCATCGGCGGTGGTTATTACAACAAAACGCTCGACGCGATAAGCACCAACGCGCCTTCGGCGATATATCAGATTAAAGTCTGCGTTACCATTGGCGAACGTGACCCTGGTCGCCAGGTCATGCGTACAACAACCACTTCGGTTTa > 1:666305/1‑150 (MQ=255) atcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTc < 1:158334‑M2/144‑1 (MQ=255) atcaccCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTc < 2:319165‑M2/144‑1 (MQ=255) | GTCAACCTGCTTAATCAGGCGCTAGGCAATCGCTACGATCTCTACATCGACTTACCGCGTGAGGAGCGTATCCGCGCATTAAATGCAGAACTTGCCCCCATTACCGAAAATATCACTCACGCCTTCCCTGGCATCGGCGCTGGTTATTACAACAAAACGCTGGATGCGATAATCACCTACGCGCCTTCAGCGCTATATCAGAATAATGTCGGCGTTACCATTGCCGCAGATCACCCTGGTCGCGAAGTCATGCGTACAAATACCCCTTTGGTTTATTC > REL606/2266905‑2267182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |