| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 590471 | NA (NA) | 34 (1.280) | 26/276 | NT | 100% | noncoding (1977/1977 nt) | IS150 | repeat region |
| ? | REL606 | = 2999596 | 0 (0.000) | coding (33/2847 nt) | flu | antigen 43 (Ag43) phase‑variable biofilm formation autotransporter | |||||
AAGCATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGGTATGGAATCACATTACGGGCACCCTGGTGGTGGCTTCCGAACTGGCCCGCTCACGGGGAAAACGCGCCGGTGTGGCGGTTGCGCTGTCTCTTGCTGCTGTTACGTCAGTCCCGGCACTGGCTGCTGACACGGTCGTACAGGCGGG > REL606/2999452‑2999742 | aaGCATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtac > 2:77446‑M2/1‑145 (MQ=255)aaGCATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtac > 2:186029‑M2/1‑145 (MQ=255)aaGCATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtac > 1:237439‑M2/1‑145 (MQ=255)aaGCATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtac > 2:130634‑M2/1‑145 (MQ=255) gaattTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactg > 1:439556‑M2/3‑143 (MQ=255) gCATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactg < 2:104835‑M2/150‑8 (MQ=255) gCATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtaatg < 1:50456‑M2/150‑8 (MQ=255) cATTTATGTCCGTGTAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactga > 1:341590‑M2/1‑142 (MQ=255) cATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactga < 2:342569‑M2/150‑9 (MQ=255) ccACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCCGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagt < 1:57672‑M2/150‑28 (MQ=255) ttATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaac < 2:118895‑M2/150‑33 (MQ=255) aTGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcata < 1:604760‑M2/150‑43 (MQ=255) tGTTTTGTACCTGCCGGTATCCACATGTGTGGGTACCGGCTTTTTTATTCACCCTCTCTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaatttggacagttaaccactatgcatatagg > 1:104531‑M2/1‑104 (MQ=255) gTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatatagtt < 1:366605‑M2/150‑48 (MQ=255) gTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt < 2:249511‑M2/150‑48 (MQ=255) gTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggt < 1:588477‑M2/150‑48 (MQ=255) ttttGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtc > 2:606534‑M2/1‑102 (MQ=255) tttgGTACCTGCCGGTATCCACATTTCTGGGTACCGGCATTTTTATTCACCCTCTGTAACGAATCGCTGATCAAACGCTCTCTGAACACCAGCTACAGGCTGtgtactgaccccaaatagttggacagttaaacacgaggcatataggtc > 1:80292‑M2/1‑102 (MQ=255) ggTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatatt < 2:244609‑M2/150‑62 (MQ=255) cccTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattc < 2:217663‑M2/150‑98 (MQ=255) ctGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttct < 2:47288‑M2/150‑102 (MQ=255) ctGTAAGGAAAAGCTGATGAAACGACATCTGAAAACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaaaacgaggcatataggcctgtttccgatattcaattggaggcagaccttttaatttcaggctaattcttct < 2:396614‑M2/150‑102 (MQ=255) aaGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctg < 1:577652‑M2/150‑106 (MQ=255) aaaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgta > 2:50609‑M2/1‑40 (MQ=255) aaGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtag > 1:248801‑M2/1‑39 (MQ=255) gCTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagta > 2:590213‑M2/1‑37 (MQ=255) cTGATGAAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtat > 1:51459‑M2/1‑36 (MQ=255) gatgaAACGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattc > 2:666100‑M2/1‑34 (MQ=255) aaTGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttacacacgtggcttataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagttttcaatat > 1:18014‑M2/1‑29 (MQ=255) aaCGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatat > 2:119201‑M2/1‑29 (MQ=255) aaCGACATCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatat > 1:47144‑M2/1‑29 (MQ=255) agtctGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattcc > 2:598568‑M2/3‑24 (MQ=255) aTCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccg > 2:57841‑M2/1‑23 (MQ=255) tCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgt > 1:118548‑M2/1‑22 (MQ=255) tCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccct < 1:596810‑M2/150‑129 (MQ=255) tCTGAACACCAGCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtcagattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgt < 2:392846‑M2/150‑129 (MQ=255) gtgtataagagacaggttgtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaac > 2:432023‑M2/12‑19 (MQ=255) gCTACAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatcct < 2:484668‑M2/150‑140 (MQ=255) cAGGCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcag > 2:367668‑M2/1‑7 (MQ=255) gCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc < 1:394081‑M2/150‑147 (MQ=255) gCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc > 2:308659‑M2/1‑4 (MQ=255) gCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc < 1:291578‑M2/150‑147 (MQ=255) gCTGtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaattcttctgctgttgtagtattcaatatattccgtaacagcatccttcagttc < 2:74914‑M2/150‑147 (MQ=255) | AAGCATTTATGTCCGGGAAAAACCACTTTATCTGACCATGCTGTTTTGTACCTGCCGGTATCCACATTTGTGGGTACCGGCTTTTTTATTCACCCTCTGTAAGGAAAAGCTGATGAAACGACATCTGAACACCAGCTACAGGCTGGTATGGAATCACATTACGGGCACCCTGGTGGTGGCTTCCGAACTGGCCCGCTCACGGGGAAAACGCGCCGGTGTGGCGGTTGCGCTGTCTCTTGCTGCTGTTACGTCAGTCCCGGCACTGGCTGCTGACACGGTCGTACAGGCGGG > REL606/2999452‑2999742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |