New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2775877	NA (NA)	25 (0.940)	18/278	NT	100%	noncoding (1/1443 nt)	IS150	repeat region
	?	REL606	3048489 =	0 (0.000)					intergenic (‑318/+37)	yghK/glcB	glycolate transporter/malate synthase

CACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2775731‑2775877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCAC  >  REL606/3048489‑3048635                                                                                                                                                                                                                                                                                                        CACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCC                                                                                                                                                  >  2:163935/1‑150            aagagacaGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAAC                                                                                                                                       <  1:118860/142‑1            GCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAAC                                                                                                                                       <  2:10378/150‑1                     ATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACctgtctctt                                                                                                                              >  2:119208/1‑141                                       GTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAA                                                                                                            >  2:234548/1‑150                                         TGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATG                                                                                                          <  2:306559/150‑1                                               GTAGTGATTCACGACTTCAAGGCGCTTTTCAACGGGGTATTTTGGCTTTGGCATATTAGGGGCTATTCCATTTGATCGTCCTACACAATGGGTGCAGCACAACCGACAATAAAACTTGTCGGGGCTTTTTTGACGTTATTAACAACTTTC                                                                                                    >  1:427617/1‑150                                                   TGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTT                                                                                                >  2:434445/1‑150                                                                         TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCCTTTCATCGTCCAACAATATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTGTTGCCGCTATTCATGCCTTTCTTTTTCGCGTAAACGCCAGGCGTGTA                                                                          >  1:575653/1‑150                                                                                        gTGGGTTTGACGTATTTGGGGCTATTCCATTTCATCGTCCAACCAAATGGGTGCAGTACACCCTACAATAAAGCTTGCCGGGGCTTGTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAAGAACGGTTCGGTAT                                                           <  1:386373/149‑1                                                                                        TTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTAT                                                           <  2:137580/150‑1                                                                                        TTGGCTTTGACATAGTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAACACTTGCCGGGGCGTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGTCGTGTAATAACGGTTCGGTAT                                                           <  1:301711/150‑1                                                                                             gagacagTATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCG                                                      <  2:411051/143‑1                                                                                             TTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATTGCCt                                                      >  1:347930/1‑149                                                                                               TGAAATATTAGTGGCTATTCCAGTTCATCTTACAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTT                                                    <  1:286819/150‑1                                                                                                    TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGctgtctc                                               >  1:409873/1‑143                                                                                                    TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCT                                               >  2:571871/1‑150                                                                                                    TATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCT                                               >  2:633911/1‑150                                                                                                     ATTAGGGTCTATTCCATTTCATCGTCAAACAAAATGTGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTGTTGACGCGATTAACTACTTTCTTTTTCGCGTAAACGCCAGGCCTGTCATAACGGTTCAGTATAGCCGTCTAGCTG                                              >  1:232413/1‑150                                                                                                     ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTG                                              >  1:41076/1‑150                                                                                                           GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCAt                                        >  1:493274/1‑149                                                                                                                            GTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAAT                       >  1:249398/1‑150                                                                                                                            GTCCAACAAAATGGGTGCAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAAT                       <  2:250109/150‑1                                                                                                                                          GTGCAGTACACCCGACAATAAAACTTGCCGGGGC‑TTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAA        >  2:555698/1‑150                                                                                                                                             CAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAA      >  1:166203/1‑150                                                                                                                                             CAGTACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAA      >  2:67783/1‑150                                                                                                                                                 ACACCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCAC  >  2:301579/1‑150                                                                                                                                                                                                                                                                                                        CACCAAAACGTGCCGAGATGATCCTGTAACCATCATCAGTTGTGAAGTAGTGATTCACGACTTCAAGGCGCTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2775731‑2775877 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGACAATAAAACTTGCCGGGGCTTTTTTGACGCTATTAATGACTTTCTTTTTCGCGTAAACGCCAGGCGTGTAATAACGGTTCGGTATAGCCGTTTGGCTGTTTCACGCCGAGGAAGATTAAATCGCTGGCAGCTTTAAAAGCAC  >  REL606/3048489‑3048635

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.