Predicted mutation
evidence seq id position mutation freq annotation gene description
RA REL606 1,746,189 G→A 100% intergenic (‑237/‑152) ydiJ ← / → ydiK predicted FAD‑linked oxidoreductase/predicted inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*REL6061,746,1890GA100.0% 77.4 / NA 23intergenic (‑237/‑152)ydiJ/ydiKpredicted FAD‑linked oxidoreductase/predicted inner membrane protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base A (14/9);  total (14/9)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

GGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTGTTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGCAGGTGAGTTTCGCGTGTTCACGTCGCGTCGACGATTTGACGCACAAAAAAGGTGAAAAG  >  REL606/1746051‑1746335
                                                                                                                                          |                                                                                                                                                  
ggATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACAt                                                                                                                                         <  1:393240/150‑1 (MQ=255)
                           gCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTa                                                                                                              <  2:423698/150‑1 (MQ=255)
                                    cTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGaa                                                                                                     >  2:111590/1‑150 (MQ=255)
                                    cTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGaa                                                                                                     >  1:174145/1‑150 (MQ=255)
                                          aggCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTACTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGcc                                                                                               <  2:467630/148‑1 (MQ=255)
                                            gCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGccct                                                                                             >  1:466302/1‑148 (MQ=255)
                                              ttACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGtt                                                                                           >  2:623005/1‑150 (MQ=255)
                                                   aTAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTaaaaa                                                                                      >  2:511222/1‑150 (MQ=255)
                                                   aTAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTaaaaa                                                                                      >  1:44095/1‑150 (MQ=255)
                                                    tAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGAAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAAc                                                                                     <  1:509767/150‑1 (MQ=255)
                                                      gTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCg                                                                                   >  1:411681/1‑150 (MQ=255)
                                                          gTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTCAAAAACCGCTGa                                                                               >  1:362868/1‑150 (MQ=255)
                                                            gACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGaaa                                                                             >  1:669418/1‑150 (MQ=255)
                                                            gACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGaaa                                                                             >  1:369747/1‑150 (MQ=255)
                                                                            cgTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGc                                                             <  2:363822/150‑1 (MQ=255)
                                                                            cgTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGc                                                             <  2:363915/150‑1 (MQ=255)
                                                                            cgTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGc                                                             <  2:370819/150‑1 (MQ=255)
                                                                            cgTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCAGAAATTGCTCATCATTATGc                                                             <  1:307140/150‑1 (MQ=255)
                                                                                      gcaCATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGCAGGTGAGttt                                                   <  2:540106/150‑1 (MQ=255)
                                                                                               aCTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGCAGGTGAGTTTCGCGTGTTc                                          >  1:302246/1‑150 (MQ=255)
                                                                                                   gAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGCAGGTGAGTTTCGCGTGTTCAcgt                                      >  2:549055/1‑150 (MQ=255)
                                                                                                             gaGTAAATCGTTTGCGTGTTGCCTGAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGCAGGTGAGTTTCGCGTGTTCACGTCGCGTcgacg                            >  1:136028/1‑150 (MQ=255)
                                                                                                                                     gAGTTATTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGCAGGTGAGTTTCGCGTGTTCACGTCGCGTCGACGATTTGACGCACAAAACAGGTGaaa    >  2:172546/1‑150 (MQ=255)
                                                                                                                                       gttattGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGCAGGTGAGTTTCGCGTGTTCACGTCTCGTCGACGATTTGACGCACAAAAAAGGTGAAAag  >  2:549320/1‑150 (MQ=255)
                                                                                                                                          |                                                                                                                                                  
GGATTTCGTGTTGCAGGAAGGCGGCAAGCGAGTGAACTCCAGGAGCTTACAATAGTAAGTGACTGGGGTGAACGAACGTAGCCGCAGCACATGCAACTTGAAATACGACGAGTAAATCGTTTGCGTGTTGCCTGAGTTGTTGTACCACATTTTTTTCTAACACGCCCATCAGAATTAAGGGCAGAATCGGCCTGTTAAAAACCGCTGAAATTGCTCATCATTATGCAGGTGAGTTTCGCGTGTTCACGTCGCGTCGACGATTTGACGCACAAAAAAGGTGAAAAG  >  REL606/1746051‑1746335

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: