| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 4,275,717 | 57510 bp→GTACA | 100% | [yjcO]–[lysU] | 52 genes [yjcO], fdhF, yjcP, yjcQ, yjcR, yjcS, alsK, alsE, alsC, alsA, alsB, rpiR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnE, phnD, phnC, phnB, phnA, yjdA, yjcZ, proP, basS, basR, yjdB, yjdE, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, dcuR, dcuS, dcuS, yjdI, yjdJ, yjdK, [lysU] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 4275717 | 4333226 | 57510 | 40 [0] | [0] 40 | [yjcO]–[lysU] | [yjcO],fdhF,yjcP,yjcQ,yjcR,yjcS,alsK,alsE,alsC,alsA,alsB,rpiR,rpiB,yjdP,phnP,phnO,phnN,phnM,phnL,phnK,phnJ,phnI,phnH,phnG,phnF,phnE,phnD,phnC,phnB,phnA,yjdA,yjcZ,proP,basS,basR,yjdB,yjdE,adiY,adiA,melR,melA,melB,yjdF,fumB,dcuB,dcuR,dcuS,dcuS,yjdI,yjdJ,yjdK,[lysU] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 4275716 | 0 (0.000) | 34 (1.320) +GTACA |
21/268 | NT | 100% | coding (232/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | 4333227 = | 0 (0.000) | coding (211/1518 nt) | lysU | lysine tRNA synthetase, inducible | |||||
ATTGCCTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4275571‑4275716‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCG > REL606/4333227‑4333371 ||||| ATTGCCTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTGCTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTACAGACTGACCGGATTGGTGATGTAC < 1:74874/150‑1 CTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAATAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAAC < 1:194333/150‑1 CTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAAC < 2:569425/150‑1 TTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCG < 2:588390/150‑1 GATAATCCGGTTTACCCGCTTGCGTATTTACCAGAATATGCGCCAGCGTTACTTCCCCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGA < 1:641002/150‑1 ATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGAC < 2:90191/150‑1 TAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACT < 2:268180/150‑1 GGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATG > 1:290239/1‑150 GTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTTCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGT < 1:654994/150‑1 CCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGG < 2:291066/150‑1 CGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGA < 2:527441/150‑1 CCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGT > 2:384050/1‑150 atcTGCGCCAGCGTTACTTCACTTTCTTTATTACCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCAAAACTTCCATGTTTAAGGATTCCAGTTCCTAGTTATCC > 1:566914/4‑150 TACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTC < 1:111748/150‑1 TCTTTTCTGCCCGCTGGTGTCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAAC < 1:88755/150‑1 TCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTTCAAC > 1:95053/1‑150 TCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAAC < 2:634576/150‑1 CCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGG < 1:382935/150‑1 CCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGG < 2:64540/150‑1 CCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGG < 2:676475/150‑1 ACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGA > 2:547821/1‑150 GTGGATGGTCCGTACTGACCGGATTGGTTATGTACACAACCGAGACTTGAATGTTTAAGGCTTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACAC < 1:144846/150‑1 gacagAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACC < 2:7886/145‑1 TGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAATGCCACACC < 1:546237/150‑1 TGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACC < 1:315992/150‑1 TGGATAGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACC < 1:151036/150‑1 AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCctgtc > 1:7857/1‑145 AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCT > 1:325868/1‑150 AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCT > 2:683731/1‑150 AGTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCT < 2:178463/150‑1 aTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTG > 2:77190/2‑150 GTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTG > 2:589275/1‑150 GTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTG > 1:531323/1‑150 GTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTG > 2:655812/1‑150 GTCCAGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGCTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTG > 2:660969/1‑150 AGACTGACCGGATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGT < 1:587542/150‑1 GATTGGTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCAAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTAAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGATGACGTAGTGCCGCCA > 1:232819/1‑150 GTGATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTT > 2:145217/1‑150 GATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTC > 2:525379/1‑150 GATGTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTC > 1:406167/1‑150 GTACACAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCG > 2:452660/1‑150 ||||| ATTGCCTTTGGATAATCCGGTTTACCCGCTTGAGTATTTACCAGAATATGCGCCAGCGTTACTTCACCTTCTTTACTGCCCGCTTGCGCCGCTTTCTCTGCAAGAACTTTTGCTTGTGGATAGTCCAGACTGACCGGATTGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4275571‑4275716‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAACCGAGACTTCAATGTTTAAGGATTCCAGTTCCTGGTTATCCTTCGCATCAAACTCTTCGTGCAACTGCTCAGAGGTATGGTCGCGGCGAAAATCATTGGGAAACGCCACACCTTGCTGACGTAGTGCCGCCAGTTTTTCGCG > REL606/4333227‑4333371 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |