| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 590471 | NA (NA) | 21 (0.790) | 16/278 | NT | 100% | noncoding (1977/1977 nt) | IS150 | repeat region |
| ? | REL606 | 4049580 = | 0 (0.000) | coding (324/1242 nt) | yihS | predicted glucosamine isomerase | |||||
TCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAGCGCCAGGTCGACCCATCGCCGCAGCAACGGAATAAAC > REL606/4049437‑4049729 | ctgaaggatgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAg < 1:536834‑M2/7‑1 (MQ=255) tgctgttacggaatatattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATccac < 1:393968‑M2/15‑1 (MQ=255) atattgaatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCAt > 2:61855‑M2/122‑150 (MQ=255) aatactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGc < 1:453010‑M2/35‑1 (MQ=255) tactacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAg > 1:467915‑M2/114‑150 (MQ=255) ctacaacagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGc > 2:596536‑M2/112‑150 (MQ=255) acagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAcc < 1:447643‑M2/44‑1 (MQ=255) acagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAcc < 2:644054‑M2/44‑1 (MQ=255) acagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAcc < 1:207938‑M2/44‑1 (MQ=255) acagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATAcc < 2:469248‑M2/44‑1 (MQ=255) cagcagaagaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCa < 1:594783‑M2/45‑1 (MQ=255) attaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACg > 1:151279‑M2/85‑150 (MQ=255) gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAACCGCCATATTTTTTATCACGCAGTGCGCCGtt > 1:139664‑M2/73‑150 (MQ=255) gacctatatgcctcgtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATcaac > 2:5975‑M2/49‑150 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAgcgc > 1:405636‑M2/35‑150 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAgcgc > 2:574135‑M2/35‑150 (MQ=255) gtgtttaactgtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAgcgc > 2:315170‑M2/35‑150 (MQ=255) taactgtccaattttttggggtcaggacaTTTGGAGGCATCCCCCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAGCGCCAGGt < 1:5951‑M2/121‑1 (MQ=255) gtccaactttttggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAGCGCCAGGTCGAcc > 2:307646‑M2/25‑150 (MQ=255) tccaactttttggggttattacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAGCGCCAGGTCGAccc < 1:451231‑M2/127‑1 (MQ=255) tggggtcagtacaTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAGCGCCAGGTCGACCCATCGCCgcag < 2:151709‑M2/137‑1 (MQ=255) tttGGAGGCAACCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAGCGCCCGGTCGACCCATCGCCGCAGCAACGGAATacac > 1:108968/1‑150 (MQ=255) | TCCAGGCACATCTGCTCTTCTTCGCTCCAGAAATATTTCTCGATAATTTCAATGGTGTAATCGAGCAGCTTGCGCGCTTCCGGGTGACCCGTTGTGACGGCGCTGGCGGCACCCAGCAGAGCAAAGAAGTGTTGATAGCCCTGTTTGGAGGCATCCACCACGCCCTCGTCATTCACGCAGGCATACCAGCCGCCATATTTTTTATCACGCAGTGCGCCGTTCATGGCTTTGATACCGTGATCAACCAACGAGTAAGCGCCAGGTCGACCCATCGCCGCAGCAACGGAATAAAC > REL606/4049437‑4049729 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |