| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| MC JC | REL606 | 2,034,358 | Δ19,491 bp | 100% | [insB‑14]–[wcaJ] | 20 genes [insB‑14], insA‑14, wbbD, wbbC, wzy, wbbB, wbbA, vioB, vioA, wzx, rmlC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, [wcaJ] |
|
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2034358–2035096 | 2053848 | 18753–19491 | 22 [0] | [0] 22 | [insB‑14]–[wcaJ] | [insB‑14],insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,wzxC,[wcaJ] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 2034357 | 0 (0.000) | 18 (0.670) | 16/278 | NT | 100% | noncoding (737/768 nt) | IS1 | repeat region |
| ? | REL606 | 2053849 = | 0 (0.000) | coding (823/1395 nt) | wcaJ | predicted UDP‑glucose lipid carrier transferase | |||||
GTACCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2034209‑2034357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGATCAGCAGCACCGAACAGGTGGTGTCCGCCAGTTGA > REL606/2053849‑2053997 GTACCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAG < 2:92472/150‑1 ACCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTT < 2:442956/150‑1 ACCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTT < 2:243884/150‑1 ACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCAAGACAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGT > 1:417331/1‑150 ATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACC > 2:186321/1‑150 ATATAAACTGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATCTATCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACC < 1:177379/150‑1 CGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAA < 2:487071/150‑1 AATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCG > 1:137990/1‑150 TAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTATAACAAATATCCGGTAATGACTACAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGCAAGCGGC > 1:352365/1‑150 AGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATAC < 2:372319/150‑1 AGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATAC < 1:56709/150‑1 CTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAG < 1:353495/150‑1 TTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATC < 1:125018/150‑1 TATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTC < 2:550672/150‑1 GTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAAGGTTGAAGGTAAA > 1:557197/1‑150 gacagAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGAC < 1:526508/145‑1 TAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGAC < 1:358765/150‑1 AATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACctgtc > 2:528024/1‑145 ATCCGGTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGTGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGA < 2:394828/150‑1 GTAATGACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGATCAGC < 2:138384/150‑1 GACTCCAACTTATTGATAGTGTTTTAGTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGAACAGCAGCAC < 2:461904/150‑1 AGTTTGCGCAGGAGGTTAACCCCGGAACGCTGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTGGAGGCGTGAATGGAGAATGTGGAAGGTAAAGACATCGGGGATCAGCAGCACCGCACAGGTGGTCTCCGCCATTTta > 1:302942/1‑148 GTACCATTACCACCACTTAATATAACCGGAATAAGAGGTGAGCTCATAAAAATCTCCTGATAACTTTTTTATATATATAGCCACGAAAACTAGTGGGAAGAAGTCTAACAAATATCCGGTAATGACTCCAACTTATTGATAGTGTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2034209‑2034357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTTGAGCAGGCGGTTAACCCCGGAAAGCGGCGTGTCATACAGCGGCACCACCGGTACGCCATTCATCTCTTCGAGGCGTGAATGGAGAATGTTGAAGGTAAAGACATCGGGGATCAGCAGCACCGAACAGGTGGTGTCCGCCAGTTGA > REL606/2053849‑2053997 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |