Barrick Lab :: Reference Information
Getting Started in Lab
Templates and Spreadsheets
Writing
Presenting
Experimental Design and Statistics
Bacteria
Computation
General Setup and Getting Started Guides
Specific Topics/Workflows
User Guides and Manuals
Deprecated
Miscellaneous and Humor
Getting Started in Lab
Getting Started with Lab Techniques
Synthetic Biology 101
Background on what synthetic biology is and how to get started in the field.
Resources to Learn Biocomputing
Resources for learning the command line, R, Python, GitHub, etc.
Templates and Spreadsheets
Circular and Rectangular Tube Labels
Templates for printing cryotube labels.
Petri Dish Patch Templates
Grids that can be used to divide up petri dishes.
Writing
Barrick Lab Style Guide
How to format manuscript files.
Unicode Tables
Complete catalog of symbols that can be used in manuscripts.
Subtle Grammatical Usage Rules
Common grammatical mistakes and confused words.
Accessing Journal Articles
Methods for finding, discovering, and accessing various journal articles, including when off-campus.
Publicly Archive Data
Uploading data and obtaining an accession number from GenBank, SRA, Zenodo, and Dryad repositories.
How to write a response to reviewers (Rich Lenski)
Presenting
How to Graph Data
Preferred conventions for presenting data of different kinds.
Presentation Advice
Advice on how to present your research in different venues.
Experimental Design and Statistics
Introduction to Experimental Design
How to design effective experiments.
Bacteria
E. coli
Genotypes (OWW)
Common genotypes, genetic markers, and alleles.
Acinetobacter baylyi
ADP1 Genome Resources:
BLAST
|
BioCyc
|
tdk
/
kanR
sequence
Characteristics of the
E. coli
Genome
Commonly Used Plasmids
Bacterial Genetic Code
Translation table and codon nomenclature.
Computation
General Setup and Getting Started Guides
Computer Setup
How to get your computer ready for bioinformatics and computational biology.
Computing Environment Setup
Advice for setting up your Linux/Unix environment for bioinformatics and computational biology.
Learn Biocomputing
Resources for learning the command line, R, Python, GitHub, etc.
Specific Topics/Workflows
Unix Commands Quick Reference
Collection of useful Unix commands.
SSH Public Key Authentication
How to set up login without typing password between Linux machines.
Command Line File Transfer to UT Box
How to directly transfer files to/from TACC or other computers to UT Box using LFTP.
Useful Python snippets for biology
Short code blocks for performing common tasks in Python
User Guides and Manuals
TACC
– Resources at the Texas Advanced Computing Center.
Lonestar6
- high performance cluster user guide
Genome Sequencing
Deprecated
Retired Computation Pages
Older topics that are likely out of date!
Miscellaneous and Humor
Link List
Miscellaneous links of interest.
Science Quotations
Memorable and humorous sayings related to our research.
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ReferenceList
Contributors to this topic
JeffreyBarrick, GabrielSuarez, MichaelHammerling, SimonDAlton, SeanLeonard, PraneshRao
Topic revision: r57 - 2024-07-10 - 11:53:09 - Main.JeffreyBarrick
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