Barrick Lab :: Software

→ Also check out our code repository: https://github.com/barricklab

	pLannotate (Plasmid Annotation) Automated annotation of engineered DNA sequences and plasmids.
	Breseq (Bacterial Genome Resequencing) Determine mutations in evolved bacteria from next-generation sequencing data.
	OSTIR (Open Source Translation Initiation Rates) Prediction of translation initiation rates in E. coli and other bacteria.
	Evolutionary Failure Mode (EFM) Calculator Predict hypermutable sites in an engineered DNA sequence or microbial genome.
	Marker Divergence Experiments Analyze neutral marker divergence experiments to measure evolvability.
	RNA Structure Mutual Information Predict interacting bases in an RNA alignment by estimating the phylogeny-corrected significance of mutual information between columns.

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