Installing breseq on TACC Ranger

Set up modules

There seem to be compiler bugs with later versions of GCC and mixing Boost compiled with those later versions of GCC.

For compiling:

$ module swap pgi gcc/4.2.0
$ module load zlib

For running (you might want to add this to ~/.profile_user:

$ module load R


Install the current versions of autoconf, automake, libtool, and m4.

For each:

$ ./configure --prefix=$HOME/local
$ make install


Compile and install with:

$ ./bootstrap
$ ./bjam --prefix=$HOME/local install


Compile, install, and test with:

$ ./configure --prefix=$HOME/local
$ make install
$ make test

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 Barrick Lab  >  SoftwareList  >  ToolsBacterialGenomeResequencing  >  BreseqInstallRanger

Contributors to this topic Edit topic JeffreyBarrick
Topic revision: r1 - 2011-05-17 - 21:55:27 - Main.JeffreyBarrick
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