BreseqInstallRanger < Lab

---+ Installing *breseq* on TACC Ranger

---++ Set up modules

There seem to be compiler bugs with later versions of GCC and mixing Boost compiled with those later versions of GCC.

For compiling:

<code>
$ module swap pgi gcc/4.2.0 <br>
$ module load zlib
</code>

For running (you might want to add this to =~/.profile_user=:

<code>
$ module load R
</code>

---++ Autotools

Install the current versions of =autoconf=, =automake=, =libtool=, and =m4=.

For each:

<code>
$ ./configure --prefix=$HOME/local <br>
$ make install <br>
</code>

---++ Boost

Compile and install with:

<code>
$ ./bootstrap <br>
$ ./bjam --prefix=$HOME/local install <br>
</code>

---++ Breseq

Compile, install, and test with:

<code>
$ ./configure --prefix=$HOME/local <br>
$ make install <br>
$ make test
</code>

Barrick Lab > SoftwareList > ToolsBacterialGenomeResequencing > BreseqInstallRanger

Topic revision: r1 - 2011-05-17 - 21:55:27 - Main.JeffreyBarrick