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Mutual Information Support for RNA Secondary Structure Models

Predicting base interactions in RNA structures from the phylogenetic-significance of mutual information between columns.

Overview: What do these programs do?


Compile modified version of rate4site

The program rate4site is used to infer a phylogenetic tree with per-site substitution rates that generates the observed sequence alignment. In order to properly function on RNA alignments, rate4site required a minor source code modification to deal with gap characters as a separate state. For convenience, I have included this modification on the latest source release for download here.

download Download rate4site version 2.01 (Nov06) modified 18 December 2008

The included Makefile is for compiling under Windows. To compile use this command instead:

g++ -Dunix -o rate4site.exe -O3 *.cpp
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Topic revision: r1 - 18 Dec 2008 - 15:53:02 - Main.JeffreyBarrick
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