(r3) Barrick Lab :: Publicly Archiving Data

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---+ Publicly Archiving Data

These locations can give you accession numbers for data that may not be easily communicated as supplementary information for a research report. An advantage of submitting to these public databases is that your data will be archived in standard formats that others can use more easily.

---++ Submitting Sequences to GenBank

The easiest way for a few sequences is to use the [[http://www.ncbi.nlm.nih.gov/WebSub/?tool=genbank][BankIt]] web submission tool.

Geneious submission tool does not properly format GenBank submissions as of v6.06 (@JEB).

---++ Submitting Genome Sequencing Reads to the SRA

| [[http://www.ncbi.nlm.nih.gov/sra][%ICON{external}%]] SRA main page |
| [[https://pdalogin.ncbi.nlm.nih.gov/uls.cgi?url=http://trace.ncbi.nlm.nih.gov/Traces/sra_sub/sub.cgi?login=pda][%ICON{external}%]] SRA login page |
| [[http://www.ncbi.nlm.nih.gov/books/NBK47528/][%ICON{external}%]] NCBI online SRA manual |

Notes:
   * You cannot change aliases in the normal upload area, so be careful to enter them correctly the first time!
   * Be sure to use the MD5 checksum for the compressed file.
   * Illumina uploads must be in [[http://en.wikipedia.org/wiki/FASTQ_format][Illumina 1.5+ FASTQ format]], not converted to Sanger FASTQ format.

---++ Dryad

[[http://www.datadryad.org/][Dryad]] is especially good for submitting large data tables and analysis scripts (e.g., in R).

Barrick Lab > ProtocolList > PubliclyArchivingData

Contributors to this topic

JeffreyBarrick

Topic revision: r3 - 2013-02-14 - 14:33:54 - Main.JeffreyBarrick

Lab.PubliclyArchivingData moved from Lab.ProtocolsUploadingDataToSRA on 2013-02-14 - 14:28 by Main.JeffreyBarrick -