<!-- Preferences start here * Set PAGETITLE = Barrick Lab :: Publicly Archiving Data Preferences end here --> <noautolink> ---+ Publicly Archiving Data These locations can give you accession numbers for data that may not be easily communicated as supplementary information for a research report. An advantage of submitting to these public databases is that your data will be archived in standard formats that others can use more easily. ---++ Submitting Sequences to GenBank The easiest way for a few sequences is to use the [[http://www.ncbi.nlm.nih.gov/WebSub/?tool=genbank][BankIt]] web submission tool. Geneious submission tool does not properly format GenBank submissions as of v6.06 (@JEB). ---++ Submitting Genome Sequencing Reads to the SRA | [[http://www.ncbi.nlm.nih.gov/sra][%ICON{external}%]] SRA main page | | [[https://pdalogin.ncbi.nlm.nih.gov/uls.cgi?url=http://trace.ncbi.nlm.nih.gov/Traces/sra_sub/sub.cgi?login=pda][%ICON{external}%]] SRA login page | | [[http://www.ncbi.nlm.nih.gov/books/NBK47528/][%ICON{external}%]] NCBI online SRA manual | Notes: * You cannot change aliases in the normal upload area, so be careful to enter them correctly the first time! * Be sure to use the MD5 checksum for the compressed file. * Illumina uploads must be in [[http://en.wikipedia.org/wiki/FASTQ_format][Illumina 1.5+ FASTQ format]], not converted to Sanger FASTQ format. ---++ Dryad [[http://www.datadryad.org/][Dryad]] is especially good for submitting large data tables and analysis scripts (e.g., in R).
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Topic revision: r3 - 2013-02-14 - JeffreyBarrick