>hg clone http://barricklab.org/hg
Then change into the breseq directory and run the bootstrap script.
>./bootstrap
This generates the usual configure script, so now you can:
>./configure
>make
>make install
In order to make dist
you will also need to install:
Again, this can be done using MacPorts on Mac OS X. Barrick Lab > SoftwareList > ToolsBacterialGenomeResequencing > BreseqDevelopment