Breseq Developer Notes

In addition to the normal prerequisites for breseq, you will also need updated versions of these tools to work on breseq development. On Mac OS X, these can be installed using MacPorts.

To get started, first clone the breseq code repository.

Then change into the breseq directory and run the bootstrap script.

 >./bootstrap

This generates the usual configure script, so now you can:

 >./configure
 >make
 >make install

In order to make dist you will also need to install:

Again, this can be done using MacPorts on Mac OS X.


This topic: Lab > WebHome > SoftwareList > ToolsBacterialGenomeResequencing > BreseqDevelopment
Topic revision: r2 - 2011-01-30 - JeffreyBarrick