Predicted mutation
evidence seq id position mutation freq annotation gene description
JC JC REL606 2,448,493 IS186 (–) +6 bp 100% intergenic (+24/+21) nupC → / ← yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 2448493 =0 (0.000)93 (1.060) 50/74 NT 100% intergenic (+24/+26) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 2772854 = NA (NA)noncoding (1/1343 nt) IS186 repeat region
* ? REL606 = 24484980 (0.000)95 (1.080) 48/74 NT 100% intergenic (+29/+21) nupC/yfeA nucleoside (except guanosine) transporter/predicted diguanylate cyclase
?REL606 = 2774196 NA (NA)noncoding (1343/1343 nt) IS186 repeat region

Only 100 of 195 total aligned reads displayed.

ATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2448449‑2448498
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  <  REL606/2774196‑2774144
                                                                                                       
ATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTC                                                      <  1:5100306/51‑1
 TCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCC                                                     <  1:4266790/51‑1
   GCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCA                                                   >  1:8932279/1‑51
    catCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCAT                                                  >  1:2601784/4‑51
    CAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCAT                                                  >  1:5785699/1‑51
     AGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATA                                                 >  1:8438104/1‑51
     AGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATA                                                 <  1:7763632/51‑1
     AGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATA                                                 >  1:4936154/1‑51
      GCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAA                                                <  1:10923489/51‑1
      GCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAA                                                <  1:9818002/51‑1
      GCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAA                                                <  1:8095500/51‑1
       CACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAG                                               >  1:10541688/1‑51
        ACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGC                                              <  1:6332460/51‑1
         CTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCG                                             >  1:5394015/1‑51
          TGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGC                                            >  1:4535221/1‑51
            GTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTA                                          <  1:2712740/51‑1
             TGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAA                                         >  1:9380346/1‑51
             TGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAA                                         >  1:1194641/1‑51
              GCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAAC                                        >  1:6137200/1‑51
              GCTGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAAC                                        <  1:2368023/51‑1
                TGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTT                                      >  1:1264588/1‑51
                TGTAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTT                                      >  1:4354174/1‑51
                  TAAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAA                                    <  1:752010/51‑1
                   AAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAG                                   <  1:6685406/51‑1
                   AAGACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAG                                   >  1:8645940/1‑51
                     GACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGG                                 <  1:10639990/51‑1
                     GACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGG                                 <  1:8078689/51‑1
                     GACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGG                                 <  1:9057046/51‑1
                      ACCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGT                                >  1:1806962/1‑51
                       CCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT                               <  1:9526594/51‑1
                       CCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT                               >  1:854290/1‑51
                       CCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT                               >  1:6915894/1‑51
                       CCATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTT                               <  1:2537830/51‑1
                        CATACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTG                              >  1:365364/1‑51
                          TACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAA                            <  1:10044771/51‑1
                          TACATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAA                            <  1:7041613/51‑1
                            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACC                          >  1:10262141/1‑51
                            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACC                          >  1:3828469/1‑51
                            CATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACC                          <  1:8308964/51‑1
                             ATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCA                         >  1:6794600/1‑51
                             ATAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCA                         >  1:3848971/1‑51
                              TAAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCAT                        <  1:4508480/51‑1
                               AAAAAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATC                       >  1:1355367/1‑51
                                  AAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA                    <  1:1370246/51‑1
                                  AAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA                    >  1:4410941/1‑51
                                  AAAGCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGA                    >  1:3075018/1‑51
                                     GCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA                 <  1:1137264/51‑1
                                     GCCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGA                 >  1:5826313/1‑51
                                      CCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAA                >  1:7643585/1‑51
                                      CCGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAA                >  1:5279054/1‑51
                                       CGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAAT               <  1:9890332/51‑1
                                       CGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAAT               <  1:1679175/51‑1
                                       CGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAAT               <  1:7328518/51‑1
                                       CGGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAAT               >  1:2885215/1‑51
                                        GGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATG              <  1:10426860/51‑1
                                        GGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATG              >  1:6874861/1‑51
                                        GGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATG              <  1:2251147/51‑1
                                        GGGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATG              <  1:3781105/51‑1
                                         GGGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGC             >  1:8346008/1‑51
                                          GGATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCG            <  1:10943699/51‑1
                                           GATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGA           >  1:8203013/1‑51
                                            ATAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGAC          >  1:7611192/1‑51
                                             TAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACG         <  1:6366238/51‑1
                                             TAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACG         <  1:10886739/51‑1
                                             TAATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACG         >  1:4966723/1‑51
                                              AATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGC        >  1:6396197/1‑51
                                              AATTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGC        >  1:4900638/1‑51
                                                TTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCT      <  1:5943985/51‑1
                                                TTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCT      >  1:3360714/1‑51
                                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC     <  1:4567182/51‑1
                                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC     <  1:6529431/51‑1
                                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC     <  1:9606059/51‑1
                                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC     >  1:10507233/1‑51
                                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC     <  1:565104/51‑1
                                                 TCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTC     <  1:10793347/51‑1
                                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCG    >  1:3962876/1‑51
                                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCG    >  1:9705158/1‑51
                                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCG    >  1:10605365/1‑51
                                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCG    <  1:6298284/51‑1
                                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCG    <  1:7980137/51‑1
                                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCG    <  1:1019259/51‑1
                                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCG    >  1:1088943/1‑51
                                                  CCCATAAGCGCTAACTTAAGGGTTGAACCATCCGAAGAATGCGACGCCTCG    >  1:1903384/1‑51
                                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG   >  1:700050/1‑51
                                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG   <  1:7203705/51‑1
                                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG   >  1:4989680/1‑51
                                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG   <  1:304710/51‑1
                                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG   <  1:7228872/51‑1
                                                   CCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGG   >  1:8890756/1‑51
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  <  1:7398016/51‑1
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  <  1:10825303/51‑1
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  >  1:8958451/1‑51
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  >  1:6009513/1‑51
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  >  1:9132410/1‑51
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  <  1:8397497/51‑1
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  >  1:4784111/1‑51
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  >  1:4155704/1‑51
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  <  1:7557981/51‑1
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  <  1:7107924/51‑1
                                                    CATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  <  1:5520370/51‑1
                                                                                                       
ATCGCAGCACTGGTGCTGTAAGACCATACATAAAAAAGCCGGGGATAATTccc‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  REL606/2448449‑2448498
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGT  <  REL606/2774196‑2774144

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.