(r17) Barrick Lab :: Software

<!-- Preferences start here

   * Set PAGETITLE = Barrick Lab :: Code

Preferences end here -->
---+ Barrick Lab :: Code

&rarr; Also check out our code repository: [[https://github.com/barricklab][%ICON{code}% Github/BarrickLab]]

<table cellpadding=4>
<tr valign="top">
<td><img style="border-color: black;  border-style: solid; border-width: 1px;" src="%ATTACHURL%/breseq_icon.gif"></td>
<td>[[ToolsBacterialGenomeResequencing][Breseq (Bacterial Genome Resequencing)]]<br>Determine mutations in evolved bacteria from next-generation sequencing data.</td>
</tr>
<tr valign="top">
<td><img style="border-color: black;  border-style: solid; border-width: 1px;" src="%ATTACHURL%/EFM_Calculator.png"></td>
<td> [[http://barricklab.org/django/efm][Evolutionary Failure Mode (EFM) Calculator]]<br>Predict hypermutable sites in an engineered DNA sequence or microbial genome.</td>
</tr>
<tr valign="top">
<td><img style="border-color: black;  border-style: solid; border-width: 1px;" src="%ATTACHURL%/marker_divergence_icon.gif"></td>
<td> [[ToolsMarkerDivergence][Marker Divergence Experiments]]<br>Analyze neutral marker divergence experiments to measure evolvability. </td>
</tr>
<tr valign="top">
<td><img style="border-color: black;  border-style: solid; border-width: 1px;" src="%ATTACHURL%/MI_icon.gif"></td>
<td>[[ToolsRNAStructureMutualInformation][RNA Structure Mutual Information]]<br>Predict interacting bases in an RNA alignment by estimating the phylogeny-corrected significance of mutual information between columns. </td>
</tr>
</table>

<table cellpadding=4>
<tr valign="top">
<td><img style="border-color: black;  border-style: solid; border-width: 1px;" src="%ATTACHURL%/place_holder.gif"></td>
<td>[[BioPythonOnboard][Getting started with Python for biology]]<br>Short guide and some good practices for getting started with Python for biology. </td>
</tr>
</table>
Barrick Lab > SoftwareList
Topic revision: r17 - 2020-02-13 - 21:17:58 - Main.MattMcGuffie