Dear internet, Our lab is unable to distribute the Keio/ASKA strains to other institutions. We did not create them! If you want to use these fantastic E. coli resources for your research, here are two options:
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The Keio collection consists of single-gene knockout strains in the K12 BW25113 strain background (an MG1655 derivative). They contain a KanR resistance cassette in place of the gene. One can easily remove this cassette to create an in-frame deletion of the gene using FLP recombinase expression from plasmid pCP20.
The ASKA collection is a set of ORFs cloned from E. coli K12 W3110 into the high copy number plasmid pCA24N. This plasmid has a modified pMB1 replication origin (same as pQE30 from Qiagen) and CamR marker. The cloned ORF is under control of the IPTG-inducible T5-lac promoter.
Our samples of these strain collections were transferred from 96-well microplates into 384-well microplates using a 96-well pin tool. Thus, the plates are interspersed with one another, with one plate in the upper-left register, the next plate in the upper right register, the third plate in the lower left register, and the final plate in the lower right register. This is the layout in the order listed on the plate label. The attached spreadsheets can be used to determine if a strain exists in the collection (be sure you search gene synonyms) and to find the well number for a desired strain to retrieve it.
*Important!* When retrieving a strain from the freezer and regrowing it:
Some known issues with our copy of the Keio collection
I | Attachment | History | Action | Size | Date | Who | Comment |
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Platesheet__ASKA_96_384.xls | r2 r1 | manage | 358.0 K | 2024-06-06 - 15:30 | JeffreyBarrick | Updated 384 well plate naming |
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keio.collectionsheet.xls | r4 r3 r2 r1 | manage | 856.0 K | 2014-05-30 - 10:56 | JeffreyBarrick | Keio collection microplate layout, including 96- and 384-well plate versions |
Barrick Lab > ProtocolList > ReferenceKeioASKACollection