This is start of a protocol to split pooled samples which have internal barcodes into individual fastq files.

  1. copy pooled files from corral to scratch
  2. gunzip files
  3. generate a 2 column tsv with sample name and combined R1R2 barcode with no spaces
  4. run the script from barricklab repository
  5. copy new .fastq files back to corral

-- Main.DanielDeatherage - 31 May 2016

Edit | Attach | Watch | Print version | History: r1 | Backlinks | Raw View | More topic actions

 Barrick Lab  >  ComputationList  >  ProtocolsIbcAssignment

Contributors to this topic Edit topic DanielDeatherage
Topic revision: r1 - 2016-05-31 - 19:54:51 - Main.DanielDeatherage
This site is powered by the TWiki collaboration platform Powered by Perl This site is powered by the TWiki collaboration platformCopyright ©2023 Barrick Lab contributing authors. Ideas, requests, problems? Send feedback