(r3) Barrick Lab :: Computational Protocols

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---+!! Barrick Lab :: Computational Protocols

---++ Command line
   * [[ProtocolsUnixCommandsQuickReference][Unix Commands Quick Reference]] <br>Collection of useful Unix commands.
   * [[ProtocolsSSHPublicKeyAuthentication][SSH Public Key Authentication]] <br> How to set up login without typing password between Linux machines.
   * [[ProtocolsMassRename][Rename files via command line]] <br>How to use sed to rename multiple files in a single directory.

---++ Next generation sequencing data analysis
   * [[ProtocolsSequenceRetrieval][GSAF Sequence Retrieval and Backup]] <br>Instructions for downloading and backing up data sent by UT GSAF.
   * [[ProtocolsFlexbarCommands][Flexbar Commands for Trimming Adapter Sequences]] <br>Command line tools for trimming adapter sequence from NGS reads.
   * [[ProtocolsRunningBreseqOnTACC][Running <i>breseq</i> on TACC]]
   * [[ProtocolsRNASeqDifferentialExpression][Analyzing RNA-Seq data]] <br>Analyzing RNA-Seq data for differential expression.

---++ Data Management
   * [[PubliclyArchivingData][Publicly Archiving Data]]<br>Uploading data and obtaining an accession number from GenBank, SRA, and Dryad databases.

Barrick Lab > WebLeftBar > ComputationList

Contributors to this topic

JeffreyBarrick, DanielDeatherage, SimonDAlton, JuliePerreau, LucyLeblanc, StellaWang, MattMcGuffie

Topic revision: r3 - 2014-08-21 - 21:38:51 - Main.DanielDeatherage