BacterialGeneticCode < Lab

---++ Bacterial Genetic Code (NCBI Translation Table 11)
<verbatim>
  AAs  = FFLLSSSSYY**CC*WLLLLPPPPHHQQRRRRIIIMTTTTNNKKSSRRVVVVAAAADDEEGGGG 
Starts = ---M---------------M------------MMMM---------------M------------
Base1  = TTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCAAAAAAAAAAAAAAAAGGGGGGGGGGGGGGGG
Base2  = TTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGGTTTTCCCCAAAAGGGG
Base3  = TCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAG
</verbatim>

Source: NCBI http://www.ncbi.nlm.nih.gov/Taxonomy/Utils/wprintgc.cgi

To convert a nucleotide position within a gene to an amino acid position within a gene (both indexed starting at 1) use the following equation: AA = floor[ (NT-1) / 3 ] + 1.

---+++ Stop codon nomenclature

   $ *TAG* : amber
   $ *TAA* : ochre
   $ *TGA* : opal or umber

Barrick Lab > BacterialGeneticCode

Topic revision: r5 - 2013-06-08 - 16:33:57 - Main.JeffreyBarrick

Lab.BacterialGeneticCode moved from Lab.QuickReference on 2007-10-29 - 03:16 by Main.JeffreyBarrick -