breseq  version 0.35.7  revision b7a44cd89118 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	3,910,119	0	G	A	22.2%	140.5 / 34.3	63	W78* (TGG→TGA)	yifE	hypothetical protein
*	REL606	2,147,295	0	G	C	20.0%	119.7 / 18.8	45	R600P (CGC→CCC)	metG	methionyl‑tRNA synthetase

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	2103888 =	16 (0.250)	11 (0.290) +41 bp	9/118	3.2	47.0%	coding (155/216 nt)	ECB_01992	hypothetical protein
	?	REL606	= 2103918	26 (0.400)					coding (185/216 nt)	ECB_01992	hypothetical protein
*	?	REL606	= 3652533	NA (NA)	17 (0.260)	13/200	4.5	100%	noncoding (1443/1443 nt)	IS150	repeat region
	?	REL606	= 3697156	0 (0.000)					coding (280/4134 nt)	rhsA	rhsA element core protein RshA
*	?	REL606	= 2815108	89 (1.400)	13 (0.200)	10/198	5.3	12.8%	coding (832/849 nt)	yqcD	hypothetical protein
	?	REL606	2822187 =	NA (NA)					noncoding (768/768 nt)	IS1	repeat region
*	?	REL606	= 3652531	NA (NA)	9 (0.140)	5/196	7.3	NA	noncoding (1441/1443 nt)	IS150	repeat region
	?	REL606	3893549 =	NA (NA)					intergenic (+4/‑52)	kup/insJ‑5	potassium transporter/IS150 hypothetical protein
*	?	REL606	2774434 =	NA (NA)	5 (0.080) +TG	5/196	7.3	NA	intergenic (+411/+27)	insL‑5/insK‑3	putative transposase insL for insertion sequence IS186/IS150 putative transposase
	?	REL606	= 2775877	NA (NA)					noncoding (1/1443 nt)	IS150	repeat region
*	?	REL606	= 2815108	89 (1.400)	3 (0.050)	3/196	8.5	3.3%	coding (832/849 nt)	yqcD	hypothetical protein
	?	REL606	= 4504271	NA (NA)					noncoding (768/768 nt)	IS1	repeat region