New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2815108	89 (1.400)	3 (0.050)	3/196	8.5	3.3%	coding (832/849 nt)	yqcD	hypothetical protein
	?	REL606	= 4504271	NA (NA)					noncoding (768/768 nt)	IS1	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTGGACACGCG  >  REL606/4504172‑4504370                                                                                                    |                                                                                                    aCGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTAcct                                                                                                    >  1:159992/1‑101 (MQ=255)   ggAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTAcctcc                                                                                                  >  2:620316/1‑101 (MQ=255)      aGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcc                                                                                               <  2:1236755/101‑1 (MQ=255)      aGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCtcctcc                                                                                               <  1:1563978/101‑1 (MQ=255)       gTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTccc                                                                                              <  1:1212459/101‑1 (MQ=255)                gTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCaaa                                                                                     >  2:1253087/1‑101 (MQ=255)                gTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCaaa                                                                                     <  2:919238/101‑1 (MQ=255)                  tgtcAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGc                                                                                   <  2:414438/99‑1 (MQ=255)                   ctcAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCt                                                                                  <  1:681899/101‑1 (MQ=255)                     cAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTAt                                                                                <  1:1430580/101‑1 (MQ=255)                     cAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTAt                                                                                <  2:1224948/101‑1 (MQ=255)                      aaaaTCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATc                                                                               >  2:889210/1‑101 (MQ=255)                        aaTCGGTGGAGTTGCATGACGAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCAt                                                                             <  1:1271741/101‑1 (MQ=255)                            ggTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAg                                                                         >  1:1280317/1‑101 (MQ=255)                            ggTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAg                                                                         <  1:249154/101‑1 (MQ=255)                              tGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGAt                                                                       <  2:1614641/101‑1 (MQ=255)                               ggAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATa                                                                      >  2:984929/1‑101 (MQ=255)                                gAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATaa                                                                     <  1:1495837/101‑1 (MQ=255)                                 aGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAAt                                                                    <  2:266254/101‑1 (MQ=255)                                        tGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGt                                                             >  1:1650072/1‑101 (MQ=255)                                          aCAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTa                                                           >  1:686290/1‑101 (MQ=255)                                           cAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTaa                                                          <  2:1112036/101‑1 (MQ=255)                                               gTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCt                                                      <  2:1110879/101‑1 (MQ=255)                                                  aTCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCtata                                                   >  1:1675255/1‑101 (MQ=255)                                                   tCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCtatat                                                  <  2:1042737/101‑1 (MQ=255)                                                    cGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCtatata                                                 <  1:70263/101‑1 (MQ=255)                                                     gggCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAg                                                <  1:294889/101‑1 (MQ=255)                                                      ggCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAgg                                               >  2:303066/1‑101 (MQ=255)                                                      ggCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAgg                                               >  1:34018/1‑101 (MQ=255)                                                       gCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAggg                                              <  1:430779/101‑1 (MQ=255)                                                        cATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGc                                             <  2:275435/101‑1 (MQ=255)                                                          ttATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCAt                                           >  1:1662360/1‑101 (MQ=255)                                                          ttATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCAt                                           <  1:223495/101‑1 (MQ=255)                                                          ttATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCAt                                           >  2:1101341/1‑101 (MQ=255)                                                           tATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCAtt                                          <  1:1253092/101‑1 (MQ=255)                                                            aTCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCAttt                                         >  2:1120608/1‑101 (MQ=255)                                                            aTCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCAttt                                         <  2:1526827/101‑1 (MQ=255)                                                              cTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTa                                       >  2:577101/1‑101 (MQ=255)                                                                gAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTaaa                                     >  2:1313550/1‑101 (MQ=255)                                                                gAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTaaa                                     >  1:1300602/1‑101 (MQ=255)                                                                  aCATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAgt                                   >  2:518812/1‑101 (MQ=255)                                                                   cATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAgtg                                  >  2:693486/1‑101 (MQ=255)                                                                   cATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAgtg                                  <  2:1289059/101‑1 (MQ=255)                                                                    aTAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAgtgt                                 <  2:251163/101‑1 (MQ=255)                                                                    aTAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAgtgt                                 >  1:440348/1‑101 (MQ=255)                                                                    aTAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAgtgt                                 >  1:1673043/1‑101 (MQ=255)                                                                    aTAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAgtgt                                 >  1:729107/1‑101 (MQ=255)                                                                     tAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGtgtt                                <  1:897610/101‑1 (MQ=255)                                                                     tAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGtgtt                                >  1:382919/1‑101 (MQ=255)                                                                       aaaCACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGtgttgt                              <  1:32865/101‑1 (MQ=255)                                                                              aTCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTa                       >  2:962800/1‑101 (MQ=255)                                                                               tCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTAc                      <  2:1280312/101‑1 (MQ=255)                                                                                cAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTAcc                     <  2:159992/101‑1 (MQ=255)                                                                                 aGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTAccc                    <  1:1045716/101‑1 (MQ=255)                                                                                  gTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCa                   >  2:167637/1‑101 (MQ=255)                                                                                      gTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCaa               >  2:798546/1‑101 (MQ=255)                                                                                       ttGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAAt              <  1:1022697/101‑1 (MQ=255)                                                                                       ttGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAAt              <  1:939265/101‑1 (MQ=255)                                                                                         ggAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAg            <  1:693491/101‑1 (MQ=255)                                                                                          gAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGt           <  2:213460/101‑1 (MQ=255)                                                                                           aGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTg          <  2:187103/101‑1 (MQ=255)                                                                                            gTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTgg         >  1:1618858/1‑101 (MQ=255)                                                                                            gTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTgg         >  1:584912/1‑101 (MQ=255)                                                                                              cATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTGGac       >  1:980960/1‑101 (MQ=255)                                                                                              cATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTGGac       >  2:609081/1‑101 (MQ=255)                                                                                                ttACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTGGacac     >  1:647357/1‑101 (MQ=255)                                                                                                  aCCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTGGACAcgc   >  1:778329/1‑101 (MQ=255)                                                                                                  aCCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTGGACAcgc   >  2:524960/1‑101 (MQ=255)                                                                                                   cctcctCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTGGACAcgcg  >  2:733535/1‑101 (MQ=255)                                                                                                    |                                                                                                    ACGGAAGTTACTGTCGTTCTCAAAATCGGTGGAGTTGCATGACAAGGTCATCGGGCATTATCTGAACATAAAACACTATCAGTAAGTTGGAGTCATTACCTCCTCCCGAACTCAAAGCTATCATACAGATAATTACTGGTTAACCCTATATAGGGCATTTTAAAGTGTTGTGATCTTACCCAGCAATAGTGGACACGCG  >  REL606/4504172‑4504370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.