New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	REL606	= 2815108	89 (1.400)	13 (0.200)	10/198	5.3	12.8%	coding (832/849 nt)	yqcD	hypothetical protein
	?	REL606	2822187 =	NA (NA)					noncoding (768/768 nt)	IS1	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCACTTCAACTTCATGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACT  >  REL606/2822088‑2822281                                                                                                    |                                                                                               agcactaacacttaaCGCCCCAGCCATAACGCTTTTTCCAGATTCCCCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTggg                                                                                               <  2:285503/92‑1 (MQ=255) aGCACTTCAACTTCATGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTggg                                                                                               <  2:193887/101‑1 (MQ=255)    acttcaacttcaTGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTaa                                                                                            <  1:1550944/101‑1 (MQ=255)    acttcaacttcaTGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTaa                                                                                            >  1:1463280/1‑101 (MQ=255)    acttcaacttcaTGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTaa                                                                                            >  2:1355647/1‑101 (MQ=255)      ttcaacttcaTGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGNCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATg                                                                                          >  1:614715/1‑101 (MQ=255)       tcaacttcaTGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGa                                                                                         >  2:1097283/1‑101 (MQ=255)       tcaacttcaTGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGa                                                                                         >  2:1183684/1‑101 (MQ=255)        caacttcaTGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGAc                                                                                        <  2:1463274/101‑1 (MQ=255)                 gcgcCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTa                                                                               <  1:1640259/101‑1 (MQ=255)                  cgcCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTAt                                                                              <  2:723610/101‑1 (MQ=255)                  cgcCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTAt                                                                              <  2:1207519/101‑1 (MQ=255)                   ggcagccaTAACGCTTTTTCCAGATTCTCCTCACAAGCGATAAGCCCATGATGTTGGAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTAtt                                                                             <  2:1654670/99‑1 (MQ=255)                    ccagccaTAGCGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTg                                                                            <  1:857709/101‑1 (MQ=255)                    ccagccaTAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTg                                                                            <  1:1287588/101‑1 (MQ=255)                    ccagccaTAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTg                                                                            <  2:721391/101‑1 (MQ=255)                      agccaTAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGAt                                                                          <  1:271813/101‑1 (MQ=255)                      agccaTAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGAt                                                                          >  1:1113518/1‑101 (MQ=255)                        ccaTAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAg                                                                        >  2:35540/1‑101 (MQ=255)                         caTAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAgt                                                                       <  1:161996/101‑1 (MQ=255)                          aTAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAgtg                                                                      <  2:1382422/101‑1 (MQ=255)                           tAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAgtgt                                                                     <  1:157459/101‑1 (MQ=255)                           tAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAgtgt                                                                     <  2:665430/101‑1 (MQ=255)                           tAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAgtgt                                                                     >  1:1407338/1‑101 (MQ=255)                                cTTGTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTAt                                                                <  2:1379115/101‑1 (MQ=255)                                 tttttCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATg                                                               >  1:1572730/1‑101 (MQ=255)                                    ttCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                            >  1:134425/1‑101 (MQ=255)                                    ttCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTc                                                            <  2:58087/101‑1 (MQ=255)                                     tCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCa                                                           <  1:1290309/101‑1 (MQ=255)                                        aGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                        <  1:1109787/101‑1 (MQ=255)                                        aGATGCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGAt                                                        <  2:1074920/101‑1 (MQ=255)                                             cACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGc                                                   >  2:841220/1‑101 (MQ=255)                                               ccTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                                                 >  1:390459/1‑101 (MQ=255)                                               ccTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGccc                                                 <  2:1215658/101‑1 (MQ=255)                                                     aaGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGAc                                           <  1:142463/101‑1 (MQ=255)                                                        cGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACttt                                        <  1:207400/101‑1 (MQ=255)                                                         gATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTg                                       >  2:1088698/1‑101 (MQ=255)                                                          aTAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                      >  1:967662/1‑101 (MQ=255)                                                          aTAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGt                                      <  2:1107174/101‑1 (MQ=255)                                                           tAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTc                                     <  2:1667238/101‑1 (MQ=255)                                                           tAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTc                                     >  2:438278/1‑101 (MQ=255)                                                            aaGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCa                                    >  1:1296436/1‑101 (MQ=255)                                                             aGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCAt                                   <  2:967657/101‑1 (MQ=255)                                                               cccATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGc                                 <  1:1664640/101‑1 (MQ=255)                                                                 cATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAg                               <  1:535399/101‑1 (MQ=255)                                                                  atgatgTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc                              >  1:71246/1‑101 (MQ=255)                                                                  atgatgTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGc                              >  1:1065313/1‑101 (MQ=255)                                                                   tgatgTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCt                             >  1:49897/1‑101 (MQ=255)                                                                      tgttgtAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCa                          <  2:775005/101‑1 (MQ=255)                                                                         tgtAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCg                       >  1:276681/1‑101 (MQ=255)                                                                          gtAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGa                      >  2:896612/1‑101 (MQ=255)                                                                             aCAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAttt                   <  2:528779/101‑1 (MQ=255)                                                                             aCAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGAttt                   <  2:614710/101‑1 (MQ=255)                                                                                   ttGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGaa             <  1:368636/101‑1 (MQ=255)                                                                                    tGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc            >  2:1321666/1‑101 (MQ=255)                                                                                    tGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAAc            >  1:185864/1‑101 (MQ=255)                                                                                     gCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg           <  2:659046/101‑1 (MQ=255)                                                                                     gCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACg           >  2:903387/1‑101 (MQ=255)                                                                                      ccTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGa          >  1:117422/1‑101 (MQ=255)                                                                                       cTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGAc         >  2:1608052/1‑101 (MQ=40)                                                                                        ttACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACa        <  2:1407332/101‑1 (MQ=40)                                                                                        ttACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCAACCGATTTTGAGAACGACa        <  2:49897/101‑1 (MQ=255)                                                                                         tACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAg       <  1:1266974/101‑1 (MQ=38)                                                                                          aCGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGc      <  1:914565/101‑1 (MQ=38)                                                                                          aCGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGc      >  1:490406/1‑101 (MQ=38)                                                                                             aTTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGAc   <  2:1572724/101‑1 (MQ=33)                                                                                              tttttGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACt  >  1:202740/1‑101 (MQ=32)                                                                                              tttttGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACt  <  2:185864/101‑1 (MQ=32)                                                                                                    |                                                                                               AGCACTTCAACTTCATGCGCCAGCCATAACGCTTTTTCCAGATTCACCTCACAAGCGATAAGCCCATGATGTTGTAACAAAGTTGCCTTACGATTTTTGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACT  >  REL606/2822088‑2822281

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.