Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 66 [0] | [0] 89 | yfcTU | predicted outer membrane export usher protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2397528 | 0 (0.000) | 64 (1.000) | 48/198 | 0.3 | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | 2397543 = | 0 (0.000) | 88 (1.400) | 66/196 | 0.0 | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
TTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCC > REL606/2397428‑2397624 | ttATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCActc > 2:162335/1‑101 (MQ=255) ttATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCActc < 2:1501452/101‑1 (MQ=255) aTCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtg > 1:649133‑M1/1‑99 (MQ=255) tctcCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgt > 2:126480‑M1/1‑98 (MQ=255) tctcCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgt > 1:1577727‑M1/1‑98 (MQ=255) cccAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtact > 1:797318‑M1/1‑95 (MQ=255) cccAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtact < 2:611128‑M1/101‑7 (MQ=255) cccAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtaca > 1:1321594‑M1/1‑95 (MQ=255) cAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgc > 2:1623752‑M1/1‑93 (MQ=255) cAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactaa > 1:1257613‑M1/1‑93 (MQ=255) gccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaa < 1:55026‑M1/101‑18 (MQ=255) gccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaa < 2:1682170‑M1/101‑18 (MQ=255) gccATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaa > 2:1043435‑M1/1‑84 (MQ=255) atatAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagtt > 2:1224653‑M1/1‑81 (MQ=255) taGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttgga < 1:1368386‑M1/101‑24 (MQ=255) cGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacag > 1:597040‑M1/1‑75 (MQ=255) cAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaa < 2:354076‑M1/101‑31 (MQ=255) cAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaa > 2:844421‑M1/1‑71 (MQ=255) aaCCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaa < 2:281134‑M1/101‑32 (MQ=255) aCCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaac < 1:601737‑M1/101‑33 (MQ=255) aCCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaac < 1:1038338‑M1/101‑33 (MQ=255) cGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacac < 1:915288‑M1/101‑35 (MQ=255) tAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgag < 2:618962‑M1/101‑38 (MQ=255) aGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgagg < 2:206268‑M1/101‑39 (MQ=255) gCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggc < 1:362995‑M1/101‑40 (MQ=255) gATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcat > 1:1620247‑M1/1‑60 (MQ=255) ggaggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctg > 2:1365954‑M1/1‑51 (MQ=255) aggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgat > 2:414825‑M1/1‑49 (MQ=255) aggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgat > 1:368154‑M1/1‑49 (MQ=255) aggCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactaaccccaaaaagttggacagttaaacacgaggcatataggtctgat < 2:1257608‑M1/101‑53 (MQ=255) gCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattc < 2:1382146‑M1/101‑55 (MQ=255) cTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattcc > 2:23606‑M1/1‑46 (MQ=255) cTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattcc > 1:955126‑M1/1‑46 (MQ=255) cACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatatt > 2:1642925‑M1/1‑40 (MQ=255) aCCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattc > 2:1624408‑M1/1‑39 (MQ=255) agagAAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtacagaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaat < 2:1321588‑M1/101‑66 (MQ=255) gaAAAATCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattgg < 1:1020949‑M1/101‑69 (MQ=255) aaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagt > 2:1072394‑M1/1‑30 (MQ=255) aaaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagt > 2:560163‑M1/1‑30 (MQ=255) aaTCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtc < 2:475232‑M1/101‑73 (MQ=255) tCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcag < 2:269013‑M1/101‑75 (MQ=255) tCCCCCCTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcag > 1:1459279‑M1/1‑27 (MQ=255) cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt > 1:786759‑M1/1‑21 (MQ=255) cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt > 2:460819‑M1/1‑21 (MQ=255) cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt > 1:657794‑M1/1‑21 (MQ=255) cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt < 1:1336601‑M1/101‑81 (MQ=255) cTCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttt > 1:358497‑M1/1‑21 (MQ=255) tCGACATGGTGGCCCCACTCtgtactgcccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttt < 1:1169707‑M1/101‑82 (MQ=255) tCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttt < 1:461595‑M1/101‑82 (MQ=255) tCGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttt < 1:677060‑M1/101‑82 (MQ=255) gaacaTGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttta > 2:1023410‑M1/3‑19 (MQ=255) cGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagtcctttta > 2:1250797‑M1/1‑19 (MQ=255) cGACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagacctttta < 2:357262‑M1/101‑83 (MQ=255) gACATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaa > 1:1546565‑M1/1‑18 (MQ=255) cATGGTGGCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatt > 1:1231174‑M1/1‑16 (MQ=255) gtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcag > 1:729903‑M1/1‑12 (MQ=255) gtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcag < 1:939168‑M1/101‑90 (MQ=255) gtggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcag < 2:396305‑M1/101‑90 (MQ=255) tggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcagg < 2:1638328‑M1/101‑91 (MQ=255) ggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggc > 1:956307‑M1/1‑10 (MQ=255) ggCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggc < 2:1597352‑M1/101‑92 (MQ=255) gCCCCACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggct > 2:145021‑M1/1‑9 (MQ=255) annnnctctgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggcta > 2:7620‑M1/6‑8 (MQ=255) cccACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaa > 1:1061714‑M1/1‑7 (MQ=255) ccACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaat < 2:804899‑M1/101‑96 (MQ=255) cACTCtgtactgaccccaaaaagttggacagttaaacacgaggcatataggtctgattccgatattcaattggagtcagaccttttaatttcaggctaatt > 2:878050‑M1/1‑5 (MQ=255) | TTATCTCCCAGCGCGCCGCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCC > REL606/2397428‑2397624 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |