Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
MC JC JC | REL606 | 2,397,529 | IS150 (–) Δ14 bp | coding (1124‑1137/2646 nt) | yfcTU ← | predicted outer membrane export usher protein |
Missing coverage evidence... | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|
seq id | start | end | size | ←reads | reads→ | gene | description | |||
* | * | ÷ | REL606 | 2397529 | 2397542 | 14 | 66 [0] | [0] 89 | yfcTU | predicted outer membrane export usher protein |
New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | REL606 | = 2397528 | 0 (0.000) | 64 (1.000) | 48/198 | 0.3 | 100% | coding (1138/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | 2774435 = | NA (NA) | noncoding (1443/1443 nt) | IS150 | repeat region | |||||
* | ? | REL606 | 2397543 = | 0 (0.000) | 88 (1.400) | 66/196 | 0.0 | 100% | coding (1123/2646 nt) | yfcTU | predicted outer membrane export usher protein |
? | REL606 | = 2775877 | NA (NA) | noncoding (1/1443 nt) | IS150 | repeat region |
GCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGA > REL606/2397445‑2397643 | gtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca < 2:1596462‑M1/3‑1 (MQ=255) gtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca > 2:1242776‑M1/99‑101 (MQ=255) gtgattcacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacatca < 2:193896‑M1/3‑1 (MQ=255) cacgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACtt < 1:162874‑M1/9‑1 (MQ=255) cgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTta > 1:498296‑M1/91‑101 (MQ=255) cgacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTta < 1:1284848‑M1/11‑1 (MQ=255) gacttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTtat > 1:1237755‑M1/90‑101 (MQ=255) cttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa < 1:47799‑M1/14‑1 (MQ=255) cttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa > 2:883733‑M1/88‑101 (MQ=255) cttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa < 2:1583038‑M1/14‑1 (MQ=255) cttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa > 2:1164160‑M1/88‑101 (MQ=255) cttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATaa > 1:922237‑M1/88‑101 (MQ=255) ttcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAAc < 1:620467‑M1/15‑1 (MQ=255) tcaaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACg > 1:498435‑M1/86‑101 (MQ=255) caaggcgcttttcaaaaggggattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGa < 1:1246973‑M1/17‑1 (MQ=255) aaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGaa < 1:668808‑M1/18‑1 (MQ=255) aaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGaa > 2:734028‑M1/84‑101 (MQ=255) aaggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGaa < 2:1231800‑M1/18‑1 (MQ=255) aggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAc > 2:819813‑M1/83‑101 (MQ=255) ggcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcc > 1:938066‑M1/82‑101 (MQ=255) gcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcct > 2:1549509‑M1/81‑101 (MQ=255) gcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcct > 1:280579‑M1/81‑101 (MQ=255) gcgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcct < 2:820784‑M1/21‑1 (MQ=255) cgcttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctg < 1:1504909‑M1/22‑1 (MQ=255) cttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggc < 1:1162760‑M1/24‑1 (MQ=255) ttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcc > 2:957688‑M1/77‑101 (MQ=255) ttttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcc > 1:1586780‑M1/77‑101 (MQ=255) tttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct > 2:1597692‑M1/76‑101 (MQ=255) tttcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcct > 1:1195729‑M1/76‑101 (MQ=255) ttcaaaatggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctg > 1:1117387‑M1/75‑101 (MQ=255) tcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctgg > 2:223273‑M1/74‑101 (MQ=255) tcaaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAAcctggcctgg < 2:1581882‑M1/28‑1 (MQ=255) caaaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTggg < 1:622433‑M1/29‑1 (MQ=255) aaagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCg < 2:1319320‑M1/31‑1 (MQ=255) aagggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGa > 1:269003‑M1/70‑101 (MQ=255) gggtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGt > 1:1095094‑M1/68‑101 (MQ=255) gtattttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTaa < 2:1174437‑M1/36‑1 (MQ=255) ttttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGt < 2:1220039‑M1/39‑1 (MQ=255) ttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTAt > 2:1070148‑M1/61‑101 (MQ=255) ttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTAt > 2:1162755‑M1/61‑101 (MQ=255) ttggctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTAt > 2:407371‑M1/61‑101 (MQ=255) ctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCa < 1:387310‑M1/45‑1 (MQ=255) ctttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCa > 2:1460480‑M1/57‑101 (MQ=255) tttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt > 2:502293‑M1/56‑101 (MQ=255) tttgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCAt > 2:207846‑M1/56‑101 (MQ=255) tgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCg > 2:1284843‑M1/54‑101 (MQ=255) tgacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCg < 1:313559‑M1/48‑1 (MQ=255) gacatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGa < 1:635817‑M1/49‑1 (MQ=255) acatattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAg > 1:1243951‑M1/52‑101 (MQ=255) catattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAgg > 2:786538‑M1/51‑101 (MQ=255) atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGc < 1:183045‑M1/52‑1 (MQ=255) atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGc < 1:1402134‑M1/52‑1 (MQ=255) atattaggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGCCCTGGGCGAGTAAGGTATGGCATCGAGGc < 1:1230132‑M1/52‑1 (MQ=255) ttaggggctattccatttcgtcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGt > 2:1652324‑M1/47‑101 (MQ=255) taggggctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTg > 1:1236365‑M1/46‑101 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGAt > 1:1475364‑M1/41‑101 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGAt > 2:730402‑M1/41‑101 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGAt > 2:622428‑M1/41‑101 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGAt > 2:838825‑M1/41‑101 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGAt > 1:221691‑M1/41‑101 (MQ=255) gctattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGAt > 2:685505‑M1/41‑101 (MQ=255) tattccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGt < 2:602030‑M1/63‑1 (MQ=255) attccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTc > 1:1662824‑M1/38‑101 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCat > 2:781442‑M1/36‑101 (MQ=255) tccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCat < 1:1594536‑M1/66‑1 (MQ=255) ccatttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCata < 2:1617788‑M1/67‑1 (MQ=255) atttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATAtt < 1:1635133‑M1/69‑1 (MQ=255) ttcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTcc > 2:957865‑M1/31‑101 (MQ=255) tcatcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCt > 2:873333‑M1/30‑101 (MQ=255) catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTg > 1:820789‑M1/29‑101 (MQ=255) catcgtccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTg > 2:1369559‑M1/29‑101 (MQ=255) ccaacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTg < 1:1545681‑M1/79‑1 (MQ=255) caacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTgg < 1:457850‑M1/80‑1 (MQ=255) caacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTgg < 1:1159540‑M1/80‑1 (MQ=255) aacaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGc < 2:1409108‑M1/81‑1 (MQ=255) acaaaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGcc > 1:1601938‑M1/20‑101 (MQ=255) aaatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCgtt < 1:1676163‑M1/85‑1 (MQ=255) aatgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCgttc > 2:1210963‑M1/16‑101 (MQ=255) atgggggcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCgttct < 1:1115512‑M1/87‑1 (MQ=255) tgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCgttctg < 1:1522889‑M1/88‑1 (MQ=255) tgggtgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTCGCCgtgctg < 1:1132756‑M1/88‑1 (MQ=255) tgcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCgttctgttct > 1:1581888‑M1/10‑101 (MQ=255) gcagtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGttctt > 2:1635127‑M1/9‑101 (MQ=255) agtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCa < 2:932819‑M1/95‑1 (MQ=255) gtacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCaa > 2:913067‑M1/6‑101 (MQ=255) tacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAAt > 1:193896‑M1/5‑101 (MQ=255) tacaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAAt > 2:183045‑M1/5‑101 (MQ=255) acaTCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATg > 2:161941‑M1/4‑101 (MQ=255) tcatGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGa > 1:690894/1‑101 (MQ=255) | GCCATATAGCGACCAACCGTTAGCGATCCCCCAGGAGGCTTCAGCACCAGAGAAAAATCCCCCCTCGACATGGTGGCCCCACTCTTGCGGACGTCCCATCATGACTTTATAACGAACCTGGCCTGGGCGAGTAAGGTATGGCATCGAGGCGGTGCTGATGTCATATTCCTGCACCTGGCCGTTCTGTTCTTCAATGCGA > REL606/2397445‑2397643 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |